==40367== Memcheck, a memory error detector ==40367== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40367== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40367== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestWntCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==40367== Parent PID: 23997 ==40367== ==40367== ==40367== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40367== Open file descriptor 12: ==40367== at 0x1085407D: pipe (pipe.c:29) ==40367== by 0x1B36E07D: ??? ==40367== by 0x155114CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40367== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40367== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40367== by 0xF131D38: PetscInitialize (pinit.c:924) ==40367== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40367== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40367== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40367== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40367== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40367== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40367== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40367== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) ==40367== ==40367== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40367== at 0x10858A1C: __open_nocancel (open64_nocancel.c:39) ==40367== by 0x107DCBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40367== by 0xEFDE822: ??? ==40367== by 0xEFDE96F: ??? ==40367== by 0x155B66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40367== by 0x155B6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40367== by 0x1556C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40367== by 0x155112DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40367== by 0x104A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40367== by 0x1043AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40367== by 0xF131D38: PetscInitialize (pinit.c:924) ==40367== by 0xEFA31D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40367== by 0xEFA3227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40367== by 0x1264BD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40367== by 0x1217C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40367== by 0x123E3A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40367== by 0x123D36: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40367== by 0x124349: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40367== by 0x11FFC5: main (TestWntCellCycleOdeSystem.cpp:18) ==40367== ==40367== Open file descriptor 113: ==40367== ==40367== ==40367== Open file descriptor 110: ==40367== ==40367== ==40367== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestWntCellCycleOdeSystem_valgrind.txt ==40367== ==40367== ==40367== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40367== ==40367== ==40367== ==40367== HEAP SUMMARY: ==40367== in use at exit: 618,338 bytes in 8,238 blocks ==40367== total heap usage: 185,587 allocs, 177,349 frees, 1,419,925,110 bytes allocated ==40367== ==40367== LEAK SUMMARY: ==40367== definitely lost: 0 bytes in 0 blocks ==40367== indirectly lost: 0 bytes in 0 blocks ==40367== possibly lost: 0 bytes in 0 blocks ==40367== still reachable: 24 bytes in 2 blocks ==40367== suppressed: 618,314 bytes in 8,236 blocks ==40367== Reachable blocks (those to which a pointer was found) are not shown. ==40367== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40367== ==40367== For lists of detected and suppressed errors, rerun with: -s ==40367== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)