==27000== Memcheck, a memory error detector ==27000== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27000== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27000== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==27000== Parent PID: 24057 ==27000== ==27000== ==27000== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27000== Open file descriptor 12: ==27000== at 0xFCC107D: pipe (pipe.c:29) ==27000== by 0x196AC07D: ??? ==27000== by 0x14CB44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27000== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27000== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27000== by 0x10210D38: PetscInitialize (pinit.c:924) ==27000== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27000== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27000== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27000== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27000== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27000== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27000== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27000== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27000== ==27000== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27000== at 0xFCC5A1C: __open_nocancel (open64_nocancel.c:39) ==27000== by 0xFC49BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27000== by 0xF4D4822: ??? ==27000== by 0xF4D496F: ??? ==27000== by 0x14D596DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27000== by 0x14D59938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27000== by 0x14D0F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27000== by 0x14CB42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27000== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27000== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27000== by 0x10210D38: PetscInitialize (pinit.c:924) ==27000== by 0xF4991D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27000== by 0xF499227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27000== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27000== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27000== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27000== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27000== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27000== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27000== ==27000== Open file descriptor 113: ==27000== ==27000== ==27000== Open file descriptor 110: ==27000== ==27000== ==27000== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==27000== ==27000== ==27000== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27000== ==27000== ==27000== ==27000== HEAP SUMMARY: ==27000== in use at exit: 618,281 bytes in 8,235 blocks ==27000== total heap usage: 7,487,375 allocs, 7,479,140 frees, 2,641,934,521 bytes allocated ==27000== ==27000== LEAK SUMMARY: ==27000== definitely lost: 0 bytes in 0 blocks ==27000== indirectly lost: 0 bytes in 0 blocks ==27000== possibly lost: 0 bytes in 0 blocks ==27000== still reachable: 56 bytes in 3 blocks ==27000== suppressed: 618,225 bytes in 8,232 blocks ==27000== Reachable blocks (those to which a pointer was found) are not shown. ==27000== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27000== ==27000== For lists of detected and suppressed errors, rerun with: -s ==27000== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)