==40945== Memcheck, a memory error detector ==40945== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40945== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40945== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40945== Parent PID: 24033 ==40945== ==40945== ==40945== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40945== Open file descriptor 12: ==40945== at 0x1257007D: pipe (pipe.c:29) ==40945== by 0x1B36D07D: ??? ==40945== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40945== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40945== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40945== by 0x10AE5D38: PetscInitialize (pinit.c:924) ==40945== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40945== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40945== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40945== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40945== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40945== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40945== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40945== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==40945== ==40945== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40945== at 0x12574A1C: __open_nocancel (open64_nocancel.c:39) ==40945== by 0x124F8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40945== by 0x11D75822: ??? ==40945== by 0x11D7596F: ??? ==40945== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40945== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40945== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40945== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40945== by 0x11E78418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40945== by 0x11E11D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40945== by 0x10AE5D38: PetscInitialize (pinit.c:924) ==40945== by 0x109BC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40945== by 0x109BC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40945== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40945== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40945== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40945== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40945== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40945== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==40945== ==40945== Open file descriptor 113: ==40945== ==40945== ==40945== Open file descriptor 110: ==40945== ==40945== ==40945== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt ==40945== ==40945== ==40945== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40945== ==40945== ==40945== ==40945== HEAP SUMMARY: ==40945== in use at exit: 618,446 bytes in 8,240 blocks ==40945== total heap usage: 1,617,683 allocs, 1,609,443 frees, 1,458,368,834 bytes allocated ==40945== ==40945== LEAK SUMMARY: ==40945== definitely lost: 0 bytes in 0 blocks ==40945== indirectly lost: 0 bytes in 0 blocks ==40945== possibly lost: 0 bytes in 0 blocks ==40945== still reachable: 136 bytes in 4 blocks ==40945== suppressed: 618,310 bytes in 8,236 blocks ==40945== Reachable blocks (those to which a pointer was found) are not shown. ==40945== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40945== ==40945== For lists of detected and suppressed errors, rerun with: -s ==40945== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)