==40167== Memcheck, a memory error detector ==40167== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40167== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40167== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40167== Parent PID: 24033 ==40167== ==40167== ==40167== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40167== Open file descriptor 12: ==40167== at 0x10D9707D: pipe (pipe.c:29) ==40167== by 0x196AD07D: ??? ==40167== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40167== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40167== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40167== by 0xF225D38: PetscInitialize (pinit.c:924) ==40167== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40167== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40167== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40167== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40167== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40167== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40167== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40167== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==40167== ==40167== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40167== at 0x10D9BA1C: __open_nocancel (open64_nocancel.c:39) ==40167== by 0x10D1FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40167== by 0x104B5822: ??? ==40167== by 0x104B596F: ??? ==40167== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40167== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40167== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40167== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40167== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40167== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40167== by 0xF225D38: PetscInitialize (pinit.c:924) ==40167== by 0xF0FC1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40167== by 0xF0FC227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40167== by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40167== by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40167== by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40167== by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40167== by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40167== by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==40167== ==40167== Open file descriptor 113: ==40167== ==40167== ==40167== Open file descriptor 110: ==40167== ==40167== ==40167== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==40167== ==40167== ==40167== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40167== ==40167== ==40167== ==40167== HEAP SUMMARY: ==40167== in use at exit: 618,350 bytes in 8,239 blocks ==40167== total heap usage: 1,398,844 allocs, 1,390,605 frees, 1,398,428,888 bytes allocated ==40167== ==40167== LEAK SUMMARY: ==40167== definitely lost: 0 bytes in 0 blocks ==40167== indirectly lost: 0 bytes in 0 blocks ==40167== possibly lost: 0 bytes in 0 blocks ==40167== still reachable: 56 bytes in 3 blocks ==40167== suppressed: 618,294 bytes in 8,236 blocks ==40167== Reachable blocks (those to which a pointer was found) are not shown. ==40167== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40167== ==40167== For lists of detected and suppressed errors, rerun with: -s ==40167== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)