==40327== Memcheck, a memory error detector ==40327== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40327== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40327== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40327== Parent PID: 23981 ==40327== ==40327== ==40327== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40327== Open file descriptor 12: ==40327== at 0xDB9E07D: pipe (pipe.c:29) ==40327== by 0x196B407D: ??? ==40327== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40327== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40327== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40327== by 0x1012FD38: PetscInitialize (pinit.c:924) ==40327== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40327== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40327== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40327== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40327== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40327== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40327== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40327== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==40327== ==40327== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40327== at 0xDBA2A1C: __open_nocancel (open64_nocancel.c:39) ==40327== by 0xDB26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40327== by 0xD4DA822: ??? ==40327== by 0xD4DA96F: ??? ==40327== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40327== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40327== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40327== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40327== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40327== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40327== by 0x1012FD38: PetscInitialize (pinit.c:924) ==40327== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40327== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40327== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40327== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40327== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40327== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40327== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40327== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==40327== ==40327== Open file descriptor 115: ==40327== ==40327== ==40327== Open file descriptor 112: ==40327== ==40327== ==40327== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt ==40327== ==40327== ==40327== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40327== ==40327== ==40327== ==40327== HEAP SUMMARY: ==40327== in use at exit: 618,281 bytes in 8,235 blocks ==40327== total heap usage: 40,687,075 allocs, 40,678,840 frees, 3,830,316,357 bytes allocated ==40327== ==40327== LEAK SUMMARY: ==40327== definitely lost: 0 bytes in 0 blocks ==40327== indirectly lost: 0 bytes in 0 blocks ==40327== possibly lost: 0 bytes in 0 blocks ==40327== still reachable: 56 bytes in 3 blocks ==40327== suppressed: 618,225 bytes in 8,232 blocks ==40327== Reachable blocks (those to which a pointer was found) are not shown. ==40327== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40327== ==40327== For lists of detected and suppressed errors, rerun with: -s ==40327== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)