==40993== Memcheck, a memory error detector ==40993== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40993== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40993== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40993== Parent PID: 24007 ==40993== ==40993== ==40993== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40993== Open file descriptor 12: ==40993== at 0x125BF07D: pipe (pipe.c:29) ==40993== by 0x1B3BC07D: ??? ==40993== by 0x165214CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40993== by 0x11EC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40993== by 0x11E60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40993== by 0x10B34D38: PetscInitialize (pinit.c:924) ==40993== by 0x10A0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40993== by 0x10A0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40993== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40993== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40993== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40993== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40993== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40993== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==40993== ==40993== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40993== at 0x125C3A1C: __open_nocancel (open64_nocancel.c:39) ==40993== by 0x12547BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40993== by 0x11DC4822: ??? ==40993== by 0x11DC496F: ??? ==40993== by 0x165C86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40993== by 0x165C8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40993== by 0x1657E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40993== by 0x165212DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40993== by 0x11EC7418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40993== by 0x11E60D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40993== by 0x10B34D38: PetscInitialize (pinit.c:924) ==40993== by 0x10A0B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40993== by 0x10A0B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40993== by 0x11FDA3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40993== by 0x11B613: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40993== by 0x11D8AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40993== by 0x11D7AA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40993== by 0x11DDBD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40993== by 0x119E15: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18) ==40993== ==40993== Open file descriptor 115: ==40993== ==40993== ==40993== Open file descriptor 112: ==40993== ==40993== ==40993== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedCryptSimulationsTutorial_valgrind.txt ==40993== ==40993== ==40993== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40993== ==40993== ==40993== ==40993== HEAP SUMMARY: ==40993== in use at exit: 618,450 bytes in 8,240 blocks ==40993== total heap usage: 1,617,655 allocs, 1,609,415 frees, 1,458,367,679 bytes allocated ==40993== ==40993== LEAK SUMMARY: ==40993== definitely lost: 0 bytes in 0 blocks ==40993== indirectly lost: 0 bytes in 0 blocks ==40993== possibly lost: 0 bytes in 0 blocks ==40993== still reachable: 136 bytes in 4 blocks ==40993== suppressed: 618,314 bytes in 8,236 blocks ==40993== Reachable blocks (those to which a pointer was found) are not shown. ==40993== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40993== ==40993== For lists of detected and suppressed errors, rerun with: -s ==40993== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)