==43380== Memcheck, a memory error detector ==43380== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==43380== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==43380== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==43380== Parent PID: 24069 ==43380== ==43380== Warning: invalid file descriptor -1 in syscall close() ==43380== ==43380== FILE DESCRIPTORS: 9 open (3 std) at exit. ==43380== Open file descriptor 12: ==43380== at 0xC10B07D: pipe (pipe.c:29) ==43380== by 0x1432F07D: ??? ==43380== by 0xFFF54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43380== by 0xB9F9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43380== by 0xB992D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43380== by 0xA2D4D38: PetscInitialize (pinit.c:924) ==43380== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43380== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43380== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43380== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43380== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43380== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43380== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43380== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==43380== ==43380== Open file descriptor 8: /dev/shm/open_mpi.0000 ==43380== at 0xC10FA1C: __open_nocancel (open64_nocancel.c:39) ==43380== by 0xC093BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==43380== by 0xA17F822: ??? ==43380== by 0xA17F96F: ??? ==43380== by 0x1009C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43380== by 0x1009C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43380== by 0x10052922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43380== by 0xFFF52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43380== by 0xB9F9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43380== by 0xB992D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43380== by 0xA2D4D38: PetscInitialize (pinit.c:924) ==43380== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43380== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43380== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43380== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43380== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43380== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43380== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43380== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==43380== ==43380== Open file descriptor 115: ==43380== ==43380== ==43380== Open file descriptor 112: ==43380== ==43380== ==43380== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==43380== ==43380== ==43380== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==43380== ==43380== ==43380== ==43380== HEAP SUMMARY: ==43380== in use at exit: 618,741 bytes in 8,244 blocks ==43380== total heap usage: 6,613,804 allocs, 6,605,560 frees, 4,016,616,124 bytes allocated ==43380== ==43380== LEAK SUMMARY: ==43380== definitely lost: 0 bytes in 0 blocks ==43380== indirectly lost: 0 bytes in 0 blocks ==43380== possibly lost: 0 bytes in 0 blocks ==43380== still reachable: 24 bytes in 2 blocks ==43380== suppressed: 618,717 bytes in 8,242 blocks ==43380== Reachable blocks (those to which a pointer was found) are not shown. ==43380== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==43380== ==43380== For lists of detected and suppressed errors, rerun with: -s ==43380== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34)