==40520== Memcheck, a memory error detector ==40520== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40520== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40520== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info ==40520== Parent PID: 24033 ==40520== ==40520== ==40520== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40520== Open file descriptor 12: ==40520== at 0x1257807D: pipe (pipe.c:29) ==40520== by 0x1B37607D: ??? ==40520== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40520== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40520== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40520== by 0x10AEDD38: PetscInitialize (pinit.c:924) ==40520== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40520== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40520== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40520== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40520== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40520== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40520== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40520== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==40520== ==40520== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40520== at 0x1257CA1C: __open_nocancel (open64_nocancel.c:39) ==40520== by 0x12500BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40520== by 0x11D7D822: ??? ==40520== by 0x11D7D96F: ??? ==40520== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40520== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40520== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40520== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40520== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40520== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40520== by 0x10AEDD38: PetscInitialize (pinit.c:924) ==40520== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40520== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40520== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40520== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40520== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40520== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40520== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40520== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==40520== ==40520== Open file descriptor 115: ==40520== ==40520== ==40520== Open file descriptor 112: ==40520== ==40520== ==40520== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt ==40520== ==40520== ==40520== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40520== ==40520== ==40520== ==40520== HEAP SUMMARY: ==40520== in use at exit: 618,450 bytes in 8,240 blocks ==40520== total heap usage: 53,904 allocs, 45,664 frees, 1,338,962,965 bytes allocated ==40520== ==40520== LEAK SUMMARY: ==40520== definitely lost: 0 bytes in 0 blocks ==40520== indirectly lost: 0 bytes in 0 blocks ==40520== possibly lost: 0 bytes in 0 blocks ==40520== still reachable: 136 bytes in 4 blocks ==40520== suppressed: 618,314 bytes in 8,236 blocks ==40520== Reachable blocks (those to which a pointer was found) are not shown. ==40520== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40520== ==40520== For lists of detected and suppressed errors, rerun with: -s ==40520== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)