==40943== Memcheck, a memory error detector ==40943== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40943== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40943== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGenerator -malloc_debug -malloc_dump -memory_info ==40943== Parent PID: 23915 ==40943== ==40943== ==40943== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40943== Open file descriptor 12: ==40943== at 0x6BD107D: pipe (pipe.c:29) ==40943== by 0x107B407D: ??? ==40943== by 0xBAD14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40943== by 0x5ED6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40943== by 0x5E6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40943== by 0x4B43D38: PetscInitialize (pinit.c:924) ==40943== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40943== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40943== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40943== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40943== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40943== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40943== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40943== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==40943== ==40943== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40943== at 0x6BD5A1C: __open_nocancel (open64_nocancel.c:39) ==40943== by 0x6B59BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40943== by 0x5DD2822: ??? ==40943== by 0x5DD296F: ??? ==40943== by 0xBB766DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40943== by 0xBB76938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40943== by 0xBB2C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40943== by 0xBAD12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40943== by 0x5ED6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40943== by 0x5E6FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40943== by 0x4B43D38: PetscInitialize (pinit.c:924) ==40943== by 0x4A181D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40943== by 0x4A18227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40943== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40943== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40943== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40943== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40943== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40943== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==40943== ==40943== Open file descriptor 117: ==40943== ==40943== ==40943== Open file descriptor 114: ==40943== ==40943== ==40943== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGenerator_valgrind.txt ==40943== ==40943== ==40943== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40943== ==40943== ==40943== ==40943== HEAP SUMMARY: ==40943== in use at exit: 618,334 bytes in 8,238 blocks ==40943== total heap usage: 627,252 allocs, 619,014 frees, 1,787,062,675 bytes allocated ==40943== ==40943== LEAK SUMMARY: ==40943== definitely lost: 0 bytes in 0 blocks ==40943== indirectly lost: 0 bytes in 0 blocks ==40943== possibly lost: 0 bytes in 0 blocks ==40943== still reachable: 24 bytes in 2 blocks ==40943== suppressed: 618,310 bytes in 8,236 blocks ==40943== Reachable blocks (those to which a pointer was found) are not shown. ==40943== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40943== ==40943== For lists of detected and suppressed errors, rerun with: -s ==40943== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)