==26544== Memcheck, a memory error detector ==26544== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26544== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26544== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==26544== Parent PID: 24043 ==26544== ==26544== ==26544== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26544== Open file descriptor 12: ==26544== at 0x10DE107D: pipe (pipe.c:29) ==26544== by 0x196BC07D: ??? ==26544== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26544== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26544== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26544== by 0xF292D38: PetscInitialize (pinit.c:924) ==26544== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26544== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26544== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26544== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26544== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26544== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26544== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26544== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==26544== ==26544== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26544== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) ==26544== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26544== by 0xF13E822: ??? ==26544== by 0xF13E96F: ??? ==26544== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26544== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26544== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26544== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26544== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26544== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26544== by 0xF292D38: PetscInitialize (pinit.c:924) ==26544== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26544== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26544== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26544== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26544== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26544== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26544== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26544== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==26544== ==26544== Open file descriptor 116: ==26544== ==26544== ==26544== Open file descriptor 113: ==26544== ==26544== ==26544== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==26544== ==26544== ==26544== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26544== ==26544== ==26544== ==26544== HEAP SUMMARY: ==26544== in use at exit: 618,366 bytes in 8,239 blocks ==26544== total heap usage: 868,212 allocs, 859,973 frees, 1,504,054,068 bytes allocated ==26544== ==26544== LEAK SUMMARY: ==26544== definitely lost: 0 bytes in 0 blocks ==26544== indirectly lost: 0 bytes in 0 blocks ==26544== possibly lost: 0 bytes in 0 blocks ==26544== still reachable: 56 bytes in 3 blocks ==26544== suppressed: 618,310 bytes in 8,236 blocks ==26544== Reachable blocks (those to which a pointer was found) are not shown. ==26544== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26544== ==26544== For lists of detected and suppressed errors, rerun with: -s ==26544== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)