==40418== Memcheck, a memory error detector ==40418== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40418== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40418== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info ==40418== Parent PID: 23954 ==40418== ==40418== ==40418== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40418== Open file descriptor 12: ==40418== at 0x110C107D: pipe (pipe.c:29) ==40418== by 0x1B37D07D: ??? ==40418== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40418== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40418== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40418== by 0x11AD8D38: PetscInitialize (pinit.c:924) ==40418== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40418== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40418== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40418== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40418== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40418== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40418== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40418== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==40418== ==40418== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40418== at 0x110C5A1C: __open_nocancel (open64_nocancel.c:39) ==40418== by 0x11049BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40418== by 0x109FE822: ??? ==40418== by 0x109FE96F: ??? ==40418== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40418== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40418== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40418== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40418== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40418== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40418== by 0x11AD8D38: PetscInitialize (pinit.c:924) ==40418== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40418== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40418== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40418== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40418== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40418== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40418== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40418== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==40418== ==40418== Open file descriptor 158: ==40418== ==40418== ==40418== Open file descriptor 155: ==40418== ==40418== ==40418== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexCryptBoundaryForce_valgrind.txt ==40418== ==40418== ==40418== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40418== ==40418== ==40418== ==40418== HEAP SUMMARY: ==40418== in use at exit: 618,386 bytes in 8,239 blocks ==40418== total heap usage: 56,511 allocs, 48,272 frees, 1,339,181,609 bytes allocated ==40418== ==40418== LEAK SUMMARY: ==40418== definitely lost: 0 bytes in 0 blocks ==40418== indirectly lost: 0 bytes in 0 blocks ==40418== possibly lost: 0 bytes in 0 blocks ==40418== still reachable: 56 bytes in 3 blocks ==40418== suppressed: 618,330 bytes in 8,236 blocks ==40418== Reachable blocks (those to which a pointer was found) are not shown. ==40418== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40418== ==40418== For lists of detected and suppressed errors, rerun with: -s ==40418== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)