==25918== Memcheck, a memory error detector ==25918== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25918== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25918== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==25918== Parent PID: 24042 ==25918== ==25918== ==25918== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25918== Open file descriptor 12: ==25918== at 0xDB5007D: pipe (pipe.c:29) ==25918== by 0x196BD07D: ??? ==25918== by 0x14C774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25918== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25918== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25918== by 0xFDEAD38: PetscInitialize (pinit.c:924) ==25918== by 0xD7561D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25918== by 0xD756227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25918== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25918== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25918== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25918== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25918== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25918== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==25918== ==25918== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25918== at 0xDB54A1C: __open_nocancel (open64_nocancel.c:39) ==25918== by 0xDAD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25918== by 0xD790822: ??? ==25918== by 0xD79096F: ??? ==25918== by 0x14D1C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25918== by 0x14D1C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25918== by 0x14CD2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25918== by 0x14C772DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25918== by 0x1115A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25918== by 0x110F3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25918== by 0xFDEAD38: PetscInitialize (pinit.c:924) ==25918== by 0xD7561D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25918== by 0xD756227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25918== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25918== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25918== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25918== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25918== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25918== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==25918== ==25918== Open file descriptor 158: ==25918== ==25918== ==25918== Open file descriptor 155: ==25918== ==25918== ==25918== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==25918== ==25918== ==25918== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25918== ==25918== ==25918== ==25918== HEAP SUMMARY: ==25918== in use at exit: 618,338 bytes in 8,238 blocks ==25918== total heap usage: 58,418 allocs, 50,180 frees, 1,339,317,417 bytes allocated ==25918== ==25918== LEAK SUMMARY: ==25918== definitely lost: 0 bytes in 0 blocks ==25918== indirectly lost: 0 bytes in 0 blocks ==25918== possibly lost: 0 bytes in 0 blocks ==25918== still reachable: 24 bytes in 2 blocks ==25918== suppressed: 618,314 bytes in 8,236 blocks ==25918== Reachable blocks (those to which a pointer was found) are not shown. ==25918== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25918== ==25918== For lists of detected and suppressed errors, rerun with: -s ==25918== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)