==40562== Memcheck, a memory error detector ==40562== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40562== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40562== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexBasedCellPopulationForCrypt -malloc_debug -malloc_dump -memory_info ==40562== Parent PID: 24042 ==40562== ==40562== ==40562== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40562== Open file descriptor 12: ==40562== at 0x1257807D: pipe (pipe.c:29) ==40562== by 0x1B37E07D: ??? ==40562== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40562== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40562== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40562== by 0x10AEDD38: PetscInitialize (pinit.c:924) ==40562== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40562== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40562== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40562== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40562== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40562== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40562== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40562== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==40562== ==40562== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40562== at 0x1257CA1C: __open_nocancel (open64_nocancel.c:39) ==40562== by 0x12500BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40562== by 0x11D7C822: ??? ==40562== by 0x11D7C96F: ??? ==40562== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40562== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40562== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40562== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40562== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40562== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40562== by 0x10AEDD38: PetscInitialize (pinit.c:924) ==40562== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40562== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40562== by 0x11D953: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40562== by 0x119133: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40562== by 0x11B52C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40562== by 0x11B427: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40562== by 0x11BA3B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40562== by 0x117935: main (TestVertexBasedCellPopulationForCrypt.cpp:18) ==40562== ==40562== Open file descriptor 158: ==40562== ==40562== ==40562== Open file descriptor 155: ==40562== ==40562== ==40562== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexBasedCellPopulationForCrypt_valgrind.txt ==40562== ==40562== ==40562== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40562== ==40562== ==40562== ==40562== HEAP SUMMARY: ==40562== in use at exit: 618,466 bytes in 8,240 blocks ==40562== total heap usage: 53,905 allocs, 45,665 frees, 1,338,963,907 bytes allocated ==40562== ==40562== LEAK SUMMARY: ==40562== definitely lost: 0 bytes in 0 blocks ==40562== indirectly lost: 0 bytes in 0 blocks ==40562== possibly lost: 0 bytes in 0 blocks ==40562== still reachable: 136 bytes in 4 blocks ==40562== suppressed: 618,330 bytes in 8,236 blocks ==40562== Reachable blocks (those to which a pointer was found) are not shown. ==40562== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40562== ==40562== For lists of detected and suppressed errors, rerun with: -s ==40562== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 35 from 35)