==27011== Memcheck, a memory error detector ==27011== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27011== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27011== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==27011== Parent PID: 24029 ==27011== ==27011== ==27011== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27011== Open file descriptor 12: ==27011== at 0xFCC907D: pipe (pipe.c:29) ==27011== by 0x196BC07D: ??? ==27011== by 0x14CBA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27011== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27011== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27011== by 0x10218D38: PetscInitialize (pinit.c:924) ==27011== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27011== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27011== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27011== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27011== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27011== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27011== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27011== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27011== ==27011== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27011== at 0xFCCDA1C: __open_nocancel (open64_nocancel.c:39) ==27011== by 0xFC51BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27011== by 0xF4DB822: ??? ==27011== by 0xF4DB96F: ??? ==27011== by 0x14D5F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27011== by 0x14D5F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27011== by 0x14D15922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27011== by 0x14CBA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27011== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27011== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27011== by 0x10218D38: PetscInitialize (pinit.c:924) ==27011== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27011== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27011== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27011== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27011== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27011== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27011== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27011== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) ==27011== ==27011== Open file descriptor 158: ==27011== ==27011== ==27011== Open file descriptor 155: ==27011== ==27011== ==27011== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==27011== ==27011== ==27011== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27011== ==27011== ==27011== ==27011== HEAP SUMMARY: ==27011== in use at exit: 618,297 bytes in 8,235 blocks ==27011== total heap usage: 8,504,751 allocs, 8,496,516 frees, 2,658,897,473 bytes allocated ==27011== ==27011== LEAK SUMMARY: ==27011== definitely lost: 0 bytes in 0 blocks ==27011== indirectly lost: 0 bytes in 0 blocks ==27011== possibly lost: 0 bytes in 0 blocks ==27011== still reachable: 56 bytes in 3 blocks ==27011== suppressed: 618,241 bytes in 8,232 blocks ==27011== Reachable blocks (those to which a pointer was found) are not shown. ==27011== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27011== ==27011== For lists of detected and suppressed errors, rerun with: -s ==27011== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)