==26965== Memcheck, a memory error detector ==26965== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26965== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26965== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==26965== Parent PID: 23961 ==26965== ==26965== ==26965== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26965== Open file descriptor 12: ==26965== at 0xFCC907D: pipe (pipe.c:29) ==26965== by 0x196BC07D: ??? ==26965== by 0x14CBA4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26965== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26965== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26965== by 0x10218D38: PetscInitialize (pinit.c:924) ==26965== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26965== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26965== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26965== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26965== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26965== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26965== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26965== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) ==26965== ==26965== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26965== at 0xFCCDA1C: __open_nocancel (open64_nocancel.c:39) ==26965== by 0xFC51BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26965== by 0xF4DB822: ??? ==26965== by 0xF4DB96F: ??? ==26965== by 0x14D5F6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26965== by 0x14D5F938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26965== by 0x14D15922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26965== by 0x14CBA2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26965== by 0x11588418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26965== by 0x11521D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26965== by 0x10218D38: PetscInitialize (pinit.c:924) ==26965== by 0xF4A11D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26965== by 0xF4A1227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26965== by 0x226536: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26965== by 0x21FB71: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26965== by 0x2236DC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26965== by 0x22357C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26965== by 0x223C13: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26965== by 0x21DF55: main (TestOffLatticeSimulationWithPdes.cpp:19) ==26965== ==26965== Open file descriptor 158: ==26965== ==26965== ==26965== Open file descriptor 155: ==26965== ==26965== ==26965== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==26965== ==26965== ==26965== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26965== ==26965== ==26965== ==26965== HEAP SUMMARY: ==26965== in use at exit: 618,297 bytes in 8,235 blocks ==26965== total heap usage: 8,504,753 allocs, 8,496,518 frees, 2,658,897,493 bytes allocated ==26965== ==26965== LEAK SUMMARY: ==26965== definitely lost: 0 bytes in 0 blocks ==26965== indirectly lost: 0 bytes in 0 blocks ==26965== possibly lost: 0 bytes in 0 blocks ==26965== still reachable: 56 bytes in 3 blocks ==26965== suppressed: 618,241 bytes in 8,232 blocks ==26965== Reachable blocks (those to which a pointer was found) are not shown. ==26965== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26965== ==26965== For lists of detected and suppressed errors, rerun with: -s ==26965== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)