==27306== Memcheck, a memory error detector ==27306== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27306== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27306== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27306== Parent PID: 23944 ==27306== ==27306== ==27306== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27306== Open file descriptor 12: ==27306== at 0xFDA807D: pipe (pipe.c:29) ==27306== by 0x196BC07D: ??? ==27306== by 0x14DDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27306== by 0x11A04418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27306== by 0x1199DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27306== by 0x10694D38: PetscInitialize (pinit.c:924) ==27306== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27306== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27306== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27306== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27306== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27306== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27306== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27306== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==27306== ==27306== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27306== at 0xFDACA1C: __open_nocancel (open64_nocancel.c:39) ==27306== by 0xFD30BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27306== by 0xF13E822: ??? ==27306== by 0xF13E96F: ??? ==27306== by 0x14E836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27306== by 0x14E83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27306== by 0x14E39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27306== by 0x14DDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27306== by 0x11A04418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27306== by 0x1199DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27306== by 0x10694D38: PetscInitialize (pinit.c:924) ==27306== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27306== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27306== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27306== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27306== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27306== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27306== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27306== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==27306== ==27306== Open file descriptor 158: ==27306== ==27306== ==27306== Open file descriptor 155: ==27306== ==27306== ==27306== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==27306== ==27306== ==27306== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27306== ==27306== ==27306== ==27306== HEAP SUMMARY: ==27306== in use at exit: 618,297 bytes in 8,235 blocks ==27306== total heap usage: 7,141,344 allocs, 7,133,109 frees, 8,072,488,840 bytes allocated ==27306== ==27306== LEAK SUMMARY: ==27306== definitely lost: 0 bytes in 0 blocks ==27306== indirectly lost: 0 bytes in 0 blocks ==27306== possibly lost: 0 bytes in 0 blocks ==27306== still reachable: 56 bytes in 3 blocks ==27306== suppressed: 618,241 bytes in 8,232 blocks ==27306== Reachable blocks (those to which a pointer was found) are not shown. ==27306== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27306== ==27306== For lists of detected and suppressed errors, rerun with: -s ==27306== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)