==27332== Memcheck, a memory error detector ==27332== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27332== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27332== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27332== Parent PID: 23978 ==27332== ==27332== ==27332== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27332== Open file descriptor 12: ==27332== at 0xFDA807D: pipe (pipe.c:29) ==27332== by 0x196BC07D: ??? ==27332== by 0x14DDE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27332== by 0x11A04418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27332== by 0x1199DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27332== by 0x10694D38: PetscInitialize (pinit.c:924) ==27332== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27332== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27332== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27332== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27332== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27332== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27332== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27332== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==27332== ==27332== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27332== at 0xFDACA1C: __open_nocancel (open64_nocancel.c:39) ==27332== by 0xFD30BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27332== by 0xF13E822: ??? ==27332== by 0xF13E96F: ??? ==27332== by 0x14E836DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27332== by 0x14E83938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27332== by 0x14E39922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27332== by 0x14DDE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27332== by 0x11A04418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27332== by 0x1199DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27332== by 0x10694D38: PetscInitialize (pinit.c:924) ==27332== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27332== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27332== by 0x1D4486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27332== by 0x1CDDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27332== by 0x1D1554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27332== by 0x1D13F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27332== by 0x1D1A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27332== by 0x1CC1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==27332== ==27332== Open file descriptor 158: ==27332== ==27332== ==27332== Open file descriptor 155: ==27332== ==27332== ==27332== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==27332== ==27332== ==27332== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27332== ==27332== ==27332== ==27332== HEAP SUMMARY: ==27332== in use at exit: 618,295 bytes in 8,235 blocks ==27332== total heap usage: 7,141,345 allocs, 7,133,110 frees, 8,072,506,391 bytes allocated ==27332== ==27332== LEAK SUMMARY: ==27332== definitely lost: 0 bytes in 0 blocks ==27332== indirectly lost: 0 bytes in 0 blocks ==27332== possibly lost: 0 bytes in 0 blocks ==27332== still reachable: 56 bytes in 3 blocks ==27332== suppressed: 618,239 bytes in 8,232 blocks ==27332== Reachable blocks (those to which a pointer was found) are not shown. ==27332== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27332== ==27332== For lists of detected and suppressed errors, rerun with: -s ==27332== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)