==40342== Memcheck, a memory error detector ==40342== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40342== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40342== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSimpleCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info ==40342== Parent PID: 23977 ==40342== ==40342== ==40342== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40342== Open file descriptor 12: ==40342== at 0x1095707D: pipe (pipe.c:29) ==40342== by 0x1B37E07D: ??? ==40342== by 0x154C84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40342== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40342== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40342== by 0xEEEFD38: PetscInitialize (pinit.c:924) ==40342== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40342== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40342== by 0x186CD7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40342== by 0x17F2CB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40342== by 0x18258E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40342== by 0x18242E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40342== by 0x182AC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40342== by 0x17BBF5: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40342== ==40342== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40342== at 0x1095BA1C: __open_nocancel (open64_nocancel.c:39) ==40342== by 0x108DFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40342== by 0xED9B822: ??? ==40342== by 0xED9B96F: ??? ==40342== by 0x1556D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40342== by 0x1556D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40342== by 0x15523922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40342== by 0x154C82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40342== by 0x1025F418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40342== by 0x101F8D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40342== by 0xEEEFD38: PetscInitialize (pinit.c:924) ==40342== by 0xED611D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40342== by 0xED61227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40342== by 0x186CD7: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40342== by 0x17F2CB: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40342== by 0x18258E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40342== by 0x18242E: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40342== by 0x182AC5: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40342== by 0x17BBF5: main (TestSimpleCellCycleModelsForCrypt.cpp:19) ==40342== ==40342== Open file descriptor 158: ==40342== ==40342== ==40342== Open file descriptor 155: ==40342== ==40342== ==40342== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleCellCycleModelsForCrypt_valgrind.txt ==40342== ==40342== ==40342== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40342== ==40342== ==40342== ==40342== HEAP SUMMARY: ==40342== in use at exit: 618,450 bytes in 8,240 blocks ==40342== total heap usage: 753,782 allocs, 745,542 frees, 1,372,609,027 bytes allocated ==40342== ==40342== LEAK SUMMARY: ==40342== definitely lost: 0 bytes in 0 blocks ==40342== indirectly lost: 0 bytes in 0 blocks ==40342== possibly lost: 0 bytes in 0 blocks ==40342== still reachable: 120 bytes in 4 blocks ==40342== suppressed: 618,330 bytes in 8,236 blocks ==40342== Reachable blocks (those to which a pointer was found) are not shown. ==40342== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40342== ==40342== For lists of detected and suppressed errors, rerun with: -s ==40342== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)