==41003== Memcheck, a memory error detector ==41003== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41003== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41003== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==41003== Parent PID: 24437 ==41003== ==41003== ==41003== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41003== Open file descriptor 12: ==41003== at 0x111EC07D: pipe (pipe.c:29) ==41003== by 0x1B37D07D: ??? ==41003== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41003== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41003== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41003== by 0x11AD8D38: PetscInitialize (pinit.c:924) ==41003== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41003== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41003== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41003== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41003== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41003== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41003== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41003== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==41003== ==41003== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41003== at 0x111F0A1C: __open_nocancel (open64_nocancel.c:39) ==41003== by 0x11174BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41003== by 0x109FE822: ??? ==41003== by 0x109FE96F: ??? ==41003== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41003== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41003== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41003== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41003== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41003== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41003== by 0x11AD8D38: PetscInitialize (pinit.c:924) ==41003== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41003== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41003== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41003== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41003== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41003== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41003== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41003== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==41003== ==41003== Open file descriptor 158: ==41003== ==41003== ==41003== Open file descriptor 155: ==41003== ==41003== ==41003== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==41003== ==41003== ==41003== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41003== ==41003== ==41003== ==41003== HEAP SUMMARY: ==41003== in use at exit: 618,311 bytes in 8,235 blocks ==41003== total heap usage: 6,320,395 allocs, 6,312,160 frees, 2,056,765,807 bytes allocated ==41003== ==41003== LEAK SUMMARY: ==41003== definitely lost: 0 bytes in 0 blocks ==41003== indirectly lost: 0 bytes in 0 blocks ==41003== possibly lost: 0 bytes in 0 blocks ==41003== still reachable: 56 bytes in 3 blocks ==41003== suppressed: 618,255 bytes in 8,232 blocks ==41003== Reachable blocks (those to which a pointer was found) are not shown. ==41003== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41003== ==41003== For lists of detected and suppressed errors, rerun with: -s ==41003== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)