==40630== Memcheck, a memory error detector ==40630== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40630== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40630== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestMirams2010WntOdeSystem -malloc_debug -malloc_dump -memory_info ==40630== Parent PID: 24177 ==40630== ==40630== ==40630== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40630== Open file descriptor 12: ==40630== at 0xF39D07D: pipe (pipe.c:29) ==40630== by 0x1B37607D: ??? ==40630== by 0x165814CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40630== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40630== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40630== by 0x11AD8D38: PetscInitialize (pinit.c:924) ==40630== by 0xF0081D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40630== by 0xF008227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40630== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40630== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40630== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40630== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40630== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40630== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) ==40630== ==40630== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40630== at 0xF3A1A1C: __open_nocancel (open64_nocancel.c:39) ==40630== by 0xF325BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40630== by 0x6127822: ??? ==40630== by 0x612796F: ??? ==40630== by 0x166266DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40630== by 0x16626938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40630== by 0x165DC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40630== by 0x165812DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40630== by 0x12E48418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40630== by 0x12DE1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40630== by 0x11AD8D38: PetscInitialize (pinit.c:924) ==40630== by 0xF0081D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40630== by 0xF008227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40630== by 0x1261EE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40630== by 0x12141B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40630== by 0x123B60: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40630== by 0x123A5C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40630== by 0x12406F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40630== by 0x11F065: main (TestMirams2010WntOdeSystem.cpp:18) ==40630== ==40630== Open file descriptor 158: ==40630== ==40630== ==40630== Open file descriptor 155: ==40630== ==40630== ==40630== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMirams2010WntOdeSystem_valgrind.txt ==40630== ==40630== ==40630== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40630== ==40630== ==40630== ==40630== HEAP SUMMARY: ==40630== in use at exit: 618,386 bytes in 8,239 blocks ==40630== total heap usage: 66,831 allocs, 58,592 frees, 1,340,373,092 bytes allocated ==40630== ==40630== LEAK SUMMARY: ==40630== definitely lost: 0 bytes in 0 blocks ==40630== indirectly lost: 0 bytes in 0 blocks ==40630== possibly lost: 0 bytes in 0 blocks ==40630== still reachable: 56 bytes in 3 blocks ==40630== suppressed: 618,330 bytes in 8,236 blocks ==40630== Reachable blocks (those to which a pointer was found) are not shown. ==40630== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40630== ==40630== For lists of detected and suppressed errors, rerun with: -s ==40630== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)