==40167== Memcheck, a memory error detector ==40167== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40167== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40167== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDifferentialAdhesionSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40167== Parent PID: 24053 ==40167== ==40167== ==40167== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40167== Open file descriptor 12: ==40167== at 0x10CB807D: pipe (pipe.c:29) ==40167== by 0x196B407D: ??? ==40167== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40167== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40167== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40167== by 0xF22DD38: PetscInitialize (pinit.c:924) ==40167== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40167== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40167== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40167== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40167== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40167== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40167== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40167== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) ==40167== ==40167== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40167== at 0x10CBCA1C: __open_nocancel (open64_nocancel.c:39) ==40167== by 0x10C40BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40167== by 0x104C2822: ??? ==40167== by 0x104C296F: ??? ==40167== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40167== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40167== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40167== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40167== by 0x105C0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40167== by 0x10559D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40167== by 0xF22DD38: PetscInitialize (pinit.c:924) ==40167== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40167== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40167== by 0x123D23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40167== by 0x11F693: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40167== by 0x1218FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40167== by 0x1217F8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40167== by 0x121E0B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40167== by 0x11DE95: main (TestRunningDifferentialAdhesionSimulationsTutorial.cpp:18) ==40167== ==40167== Open file descriptor 158: ==40167== ==40167== ==40167== Open file descriptor 155: ==40167== ==40167== ==40167== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDifferentialAdhesionSimulationsTutorial_valgrind.txt ==40167== ==40167== ==40167== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40167== ==40167== ==40167== ==40167== HEAP SUMMARY: ==40167== in use at exit: 618,313 bytes in 8,236 blocks ==40167== total heap usage: 2,563,998 allocs, 2,555,762 frees, 1,463,690,985 bytes allocated ==40167== ==40167== LEAK SUMMARY: ==40167== definitely lost: 0 bytes in 0 blocks ==40167== indirectly lost: 0 bytes in 0 blocks ==40167== possibly lost: 0 bytes in 0 blocks ==40167== still reachable: 72 bytes in 4 blocks ==40167== suppressed: 618,241 bytes in 8,232 blocks ==40167== Reachable blocks (those to which a pointer was found) are not shown. ==40167== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40167== ==40167== For lists of detected and suppressed errors, rerun with: -s ==40167== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)