==27311== Memcheck, a memory error detector ==27311== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27311== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27311== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27311== Parent PID: 24043 ==27311== ==27311== ==27311== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27311== Open file descriptor 12: ==27311== at 0x10DE107D: pipe (pipe.c:29) ==27311== by 0x196B407D: ??? ==27311== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27311== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27311== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27311== by 0xF292D38: PetscInitialize (pinit.c:924) ==27311== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27311== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27311== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27311== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27311== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27311== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27311== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27311== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27311== ==27311== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27311== at 0x10DE5A1C: __open_nocancel (open64_nocancel.c:39) ==27311== by 0x10D69BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27311== by 0xF144822: ??? ==27311== by 0xF14496F: ??? ==27311== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27311== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27311== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27311== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27311== by 0x10602418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27311== by 0x1059BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27311== by 0xF292D38: PetscInitialize (pinit.c:924) ==27311== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27311== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27311== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27311== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27311== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27311== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27311== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27311== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27311== ==27311== Open file descriptor 158: ==27311== ==27311== ==27311== Open file descriptor 155: ==27311== ==27311== ==27311== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt ==27311== ==27311== ==27311== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27311== ==27311== ==27311== ==27311== HEAP SUMMARY: ==27311== in use at exit: 618,295 bytes in 8,235 blocks ==27311== total heap usage: 9,703,048 allocs, 9,694,813 frees, 2,583,526,543 bytes allocated ==27311== ==27311== LEAK SUMMARY: ==27311== definitely lost: 0 bytes in 0 blocks ==27311== indirectly lost: 0 bytes in 0 blocks ==27311== possibly lost: 0 bytes in 0 blocks ==27311== still reachable: 56 bytes in 3 blocks ==27311== suppressed: 618,239 bytes in 8,232 blocks ==27311== Reachable blocks (those to which a pointer was found) are not shown. ==27311== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27311== ==27311== For lists of detected and suppressed errors, rerun with: -s ==27311== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)