==40764== Memcheck, a memory error detector ==40764== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40764== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40764== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40764== Parent PID: 24087 ==40764== ==40764== ==40764== FILE DESCRIPTORS: 10 open (3 std) at exit. ==40764== Open file descriptor 12: ==40764== at 0x125BA07D: pipe (pipe.c:29) ==40764== by 0x1B37607D: ??? ==40764== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40764== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40764== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40764== by 0x10B52D38: PetscInitialize (pinit.c:924) ==40764== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40764== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40764== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40764== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40764== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40764== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40764== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40764== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40764== ==40764== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40764== at 0x125BEA1C: __open_nocancel (open64_nocancel.c:39) ==40764== by 0x12542BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40764== by 0x10A04822: ??? ==40764== by 0x10A0496F: ??? ==40764== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40764== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40764== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40764== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40764== by 0x11EC2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40764== by 0x11E5BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40764== by 0x10B52D38: PetscInitialize (pinit.c:924) ==40764== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40764== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40764== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40764== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40764== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40764== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40764== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40764== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40764== ==40764== Open file descriptor 195: /usr/share/ca-certificates/mozilla/UCA_Global_G2_Root.crt ==40764== ==40764== ==40764== Open file descriptor 158: ==40764== ==40764== ==40764== Open file descriptor 155: ==40764== ==40764== ==40764== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==40764== ==40764== ==40764== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40764== ==40764== ==40764== ==40764== HEAP SUMMARY: ==40764== in use at exit: 618,313 bytes in 8,235 blocks ==40764== total heap usage: 3,713,951 allocs, 3,705,716 frees, 1,620,332,978 bytes allocated ==40764== ==40764== LEAK SUMMARY: ==40764== definitely lost: 0 bytes in 0 blocks ==40764== indirectly lost: 0 bytes in 0 blocks ==40764== possibly lost: 0 bytes in 0 blocks ==40764== still reachable: 56 bytes in 3 blocks ==40764== suppressed: 618,257 bytes in 8,232 blocks ==40764== Reachable blocks (those to which a pointer was found) are not shown. ==40764== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40764== ==40764== For lists of detected and suppressed errors, rerun with: -s ==40764== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)