==40991== Memcheck, a memory error detector ==40991== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40991== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40991== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningCryptSimulationsWithMutationsTutorial -malloc_debug -malloc_dump -memory_info ==40991== Parent PID: 24029 ==40991== ==40991== ==40991== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40991== Open file descriptor 12: ==40991== at 0x1257807D: pipe (pipe.c:29) ==40991== by 0x1B37607D: ??? ==40991== by 0x164F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40991== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40991== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40991== by 0x10AEDD38: PetscInitialize (pinit.c:924) ==40991== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40991== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40991== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40991== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40991== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40991== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40991== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40991== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==40991== ==40991== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40991== at 0x1257CA1C: __open_nocancel (open64_nocancel.c:39) ==40991== by 0x12500BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40991== by 0x11D82822: ??? ==40991== by 0x11D8296F: ??? ==40991== by 0x165986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40991== by 0x16598938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40991== by 0x1654E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40991== by 0x164F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40991== by 0x11E80418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40991== by 0x11E19D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40991== by 0x10AEDD38: PetscInitialize (pinit.c:924) ==40991== by 0x109C41D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40991== by 0x109C4227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40991== by 0x123E95: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40991== by 0x11F713: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40991== by 0x12197C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40991== by 0x121878: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40991== by 0x121E8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40991== by 0x11DF15: main (TestRunningCryptSimulationsWithMutationsTutorial.cpp:18) ==40991== ==40991== Open file descriptor 158: ==40991== ==40991== ==40991== Open file descriptor 155: ==40991== ==40991== ==40991== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningCryptSimulationsWithMutationsTutorial_valgrind.txt ==40991== ==40991== ==40991== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40991== ==40991== ==40991== ==40991== HEAP SUMMARY: ==40991== in use at exit: 618,313 bytes in 8,235 blocks ==40991== total heap usage: 16,190,852 allocs, 16,182,617 frees, 2,829,844,107 bytes allocated ==40991== ==40991== LEAK SUMMARY: ==40991== definitely lost: 0 bytes in 0 blocks ==40991== indirectly lost: 0 bytes in 0 blocks ==40991== possibly lost: 0 bytes in 0 blocks ==40991== still reachable: 56 bytes in 3 blocks ==40991== suppressed: 618,257 bytes in 8,232 blocks ==40991== Reachable blocks (those to which a pointer was found) are not shown. ==40991== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40991== ==40991== For lists of detected and suppressed errors, rerun with: -s ==40991== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)