==43667== Memcheck, a memory error detector ==43667== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==43667== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==43667== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==43667== Parent PID: 24029 ==43667== ==43667== Warning: invalid file descriptor -1 in syscall close() ==43667== ==43667== FILE DESCRIPTORS: 9 open (3 std) at exit. ==43667== Open file descriptor 12: ==43667== at 0xC10B07D: pipe (pipe.c:29) ==43667== by 0x1432F07D: ??? ==43667== by 0xFFF54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43667== by 0xB9F9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43667== by 0xB992D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43667== by 0xA2D4D38: PetscInitialize (pinit.c:924) ==43667== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43667== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43667== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43667== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43667== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43667== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43667== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43667== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==43667== ==43667== Open file descriptor 8: /dev/shm/open_mpi.0000 ==43667== at 0xC10FA1C: __open_nocancel (open64_nocancel.c:39) ==43667== by 0xC093BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==43667== by 0xA17F822: ??? ==43667== by 0xA17F96F: ??? ==43667== by 0x1009C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43667== by 0x1009C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43667== by 0x10052922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43667== by 0xFFF52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43667== by 0xB9F9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43667== by 0xB992D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43667== by 0xA2D4D38: PetscInitialize (pinit.c:924) ==43667== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43667== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43667== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43667== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43667== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43667== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43667== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43667== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==43667== ==43667== Open file descriptor 158: ==43667== ==43667== ==43667== Open file descriptor 155: ==43667== ==43667== ==43667== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==43667== ==43667== ==43667== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==43667== ==43667== ==43667== ==43667== HEAP SUMMARY: ==43667== in use at exit: 618,743 bytes in 8,244 blocks ==43667== total heap usage: 6,613,783 allocs, 6,605,539 frees, 4,016,627,503 bytes allocated ==43667== ==43667== LEAK SUMMARY: ==43667== definitely lost: 0 bytes in 0 blocks ==43667== indirectly lost: 0 bytes in 0 blocks ==43667== possibly lost: 0 bytes in 0 blocks ==43667== still reachable: 24 bytes in 2 blocks ==43667== suppressed: 618,719 bytes in 8,242 blocks ==43667== Reachable blocks (those to which a pointer was found) are not shown. ==43667== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==43667== ==43667== For lists of detected and suppressed errors, rerun with: -s ==43667== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34)