==40335== Memcheck, a memory error detector ==40335== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40335== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40335== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40335== Parent PID: 24044 ==40335== ==40335== ==40335== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40335== Open file descriptor 12: ==40335== at 0xF80107D: pipe (pipe.c:29) ==40335== by 0x196B407D: ??? ==40335== by 0x14CBC4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40335== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40335== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40335== by 0x1012FD38: PetscInitialize (pinit.c:924) ==40335== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40335== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40335== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40335== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40335== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40335== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40335== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40335== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==40335== ==40335== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40335== at 0xF805A1C: __open_nocancel (open64_nocancel.c:39) ==40335== by 0xF789BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40335== by 0xF13F822: ??? ==40335== by 0xF13F96F: ??? ==40335== by 0x14D616DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40335== by 0x14D61938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40335== by 0x14D17922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40335== by 0x14CBC2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40335== by 0x114A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40335== by 0x1143AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40335== by 0x1012FD38: PetscInitialize (pinit.c:924) ==40335== by 0xF1041D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40335== by 0xF104227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40335== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40335== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40335== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40335== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40335== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40335== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==40335== ==40335== Open file descriptor 158: ==40335== ==40335== ==40335== Open file descriptor 155: ==40335== ==40335== ==40335== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt ==40335== ==40335== ==40335== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40335== ==40335== ==40335== ==40335== HEAP SUMMARY: ==40335== in use at exit: 618,281 bytes in 8,235 blocks ==40335== total heap usage: 5,222,268 allocs, 5,214,033 frees, 1,778,276,010 bytes allocated ==40335== ==40335== LEAK SUMMARY: ==40335== definitely lost: 0 bytes in 0 blocks ==40335== indirectly lost: 0 bytes in 0 blocks ==40335== possibly lost: 0 bytes in 0 blocks ==40335== still reachable: 56 bytes in 3 blocks ==40335== suppressed: 618,225 bytes in 8,232 blocks ==40335== Reachable blocks (those to which a pointer was found) are not shown. ==40335== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40335== ==40335== For lists of detected and suppressed errors, rerun with: -s ==40335== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)