==43731== Memcheck, a memory error detector ==43731== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==43731== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==43731== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==43731== Parent PID: 24054 ==43731== ==43731== Warning: invalid file descriptor -1 in syscall close() ==43731== ==43731== FILE DESCRIPTORS: 9 open (3 std) at exit. ==43731== Open file descriptor 12: ==43731== at 0xC10B07D: pipe (pipe.c:29) ==43731== by 0x1432F07D: ??? ==43731== by 0xFFF54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43731== by 0xB9F9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43731== by 0xB992D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43731== by 0xA2D4D38: PetscInitialize (pinit.c:924) ==43731== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43731== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43731== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43731== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43731== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43731== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43731== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43731== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==43731== ==43731== Open file descriptor 8: /dev/shm/open_mpi.0000 ==43731== at 0xC10FA1C: __open_nocancel (open64_nocancel.c:39) ==43731== by 0xC093BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==43731== by 0xA17F822: ??? ==43731== by 0xA17F96F: ??? ==43731== by 0x1009C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43731== by 0x1009C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43731== by 0x10052922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43731== by 0xFFF52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43731== by 0xB9F9418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43731== by 0xB992D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43731== by 0xA2D4D38: PetscInitialize (pinit.c:924) ==43731== by 0xA1441D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43731== by 0xA144227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43731== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43731== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43731== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43731== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43731== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43731== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==43731== ==43731== Open file descriptor 158: ==43731== ==43731== ==43731== Open file descriptor 155: ==43731== ==43731== ==43731== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==43731== ==43731== ==43731== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==43731== ==43731== ==43731== ==43731== HEAP SUMMARY: ==43731== in use at exit: 618,745 bytes in 8,244 blocks ==43731== total heap usage: 6,613,784 allocs, 6,605,540 frees, 4,016,627,629 bytes allocated ==43731== ==43731== LEAK SUMMARY: ==43731== definitely lost: 0 bytes in 0 blocks ==43731== indirectly lost: 0 bytes in 0 blocks ==43731== possibly lost: 0 bytes in 0 blocks ==43731== still reachable: 24 bytes in 2 blocks ==43731== suppressed: 618,721 bytes in 8,242 blocks ==43731== Reachable blocks (those to which a pointer was found) are not shown. ==43731== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==43731== ==43731== For lists of detected and suppressed errors, rerun with: -s ==43731== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 128 from 34)