==40534== Memcheck, a memory error detector ==40534== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40534== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40534== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSingleOdeWntCellCycleModel -malloc_debug -malloc_dump -memory_info ==40534== Parent PID: 24054 ==40534== ==40534== ==40534== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40534== Open file descriptor 12: ==40534== at 0x1099E07D: pipe (pipe.c:29) ==40534== by 0x1B3BD07D: ??? ==40534== by 0x1550F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40534== by 0x102A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40534== by 0x1023FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40534== by 0xEF36D38: PetscInitialize (pinit.c:924) ==40534== by 0xEDA81D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40534== by 0xEDA8227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40534== by 0x18BB23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40534== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40534== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40534== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40534== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40534== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) ==40534== ==40534== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40534== at 0x109A2A1C: __open_nocancel (open64_nocancel.c:39) ==40534== by 0x10926BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40534== by 0xEDE3822: ??? ==40534== by 0xEDE396F: ??? ==40534== by 0x155B46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40534== by 0x155B4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40534== by 0x1556A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40534== by 0x1550F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40534== by 0x102A6418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40534== by 0x1023FD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40534== by 0xEF36D38: PetscInitialize (pinit.c:924) ==40534== by 0xEDA81D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40534== by 0xEDA8227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40534== by 0x18BB23: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40534== by 0x184159: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40534== by 0x187468: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40534== by 0x187363: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40534== by 0x187977: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40534== by 0x181D95: main (TestSingleOdeWntCellCycleModel.cpp:18) ==40534== ==40534== Open file descriptor 158: ==40534== ==40534== ==40534== Open file descriptor 155: ==40534== ==40534== ==40534== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSingleOdeWntCellCycleModel_valgrind.txt ==40534== ==40534== ==40534== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40534== ==40534== ==40534== ==40534== HEAP SUMMARY: ==40534== in use at exit: 618,514 bytes in 8,241 blocks ==40534== total heap usage: 263,061 allocs, 254,820 frees, 1,357,307,863 bytes allocated ==40534== ==40534== LEAK SUMMARY: ==40534== definitely lost: 0 bytes in 0 blocks ==40534== indirectly lost: 0 bytes in 0 blocks ==40534== possibly lost: 0 bytes in 0 blocks ==40534== still reachable: 200 bytes in 5 blocks ==40534== suppressed: 618,314 bytes in 8,236 blocks ==40534== Reachable blocks (those to which a pointer was found) are not shown. ==40534== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40534== ==40534== For lists of detected and suppressed errors, rerun with: -s ==40534== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)