==40250== Memcheck, a memory error detector ==40250== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40250== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40250== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningDeltaNotchSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40250== Parent PID: 24069 ==40250== ==40250== ==40250== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40250== Open file descriptor 12: ==40250== at 0xF84807D: pipe (pipe.c:29) ==40250== by 0x196FB07D: ??? ==40250== by 0x14D0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40250== by 0x114E8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40250== by 0x11481D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40250== by 0x10176D38: PetscInitialize (pinit.c:924) ==40250== by 0xF14B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40250== by 0xF14B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40250== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40250== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40250== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40250== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40250== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40250== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==40250== ==40250== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40250== at 0xF84CA1C: __open_nocancel (open64_nocancel.c:39) ==40250== by 0xF7D0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40250== by 0xF186822: ??? ==40250== by 0xF18696F: ??? ==40250== by 0x14DAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40250== by 0x14DAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40250== by 0x14D65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40250== by 0x14D0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40250== by 0x114E8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40250== by 0x11481D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40250== by 0x10176D38: PetscInitialize (pinit.c:924) ==40250== by 0xF14B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40250== by 0xF14B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40250== by 0x122D30: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40250== by 0x11E513: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40250== by 0x120830: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40250== by 0x12072B: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40250== by 0x120D3F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40250== by 0x11CD15: main (TestRunningDeltaNotchSimulationsTutorial.cpp:18) ==40250== ==40250== Open file descriptor 158: ==40250== ==40250== ==40250== Open file descriptor 155: ==40250== ==40250== ==40250== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningDeltaNotchSimulationsTutorial_valgrind.txt ==40250== ==40250== ==40250== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40250== ==40250== ==40250== ==40250== HEAP SUMMARY: ==40250== in use at exit: 618,281 bytes in 8,235 blocks ==40250== total heap usage: 5,222,242 allocs, 5,214,007 frees, 1,778,275,302 bytes allocated ==40250== ==40250== LEAK SUMMARY: ==40250== definitely lost: 0 bytes in 0 blocks ==40250== indirectly lost: 0 bytes in 0 blocks ==40250== possibly lost: 0 bytes in 0 blocks ==40250== still reachable: 56 bytes in 3 blocks ==40250== suppressed: 618,225 bytes in 8,232 blocks ==40250== Reachable blocks (those to which a pointer was found) are not shown. ==40250== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40250== ==40250== For lists of detected and suppressed errors, rerun with: -s ==40250== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)