==40678== Memcheck, a memory error detector ==40678== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40678== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40678== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVanLeeuwen2009WntSwatCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==40678== Parent PID: 24110 ==40678== ==40678== ==40678== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40678== Open file descriptor 12: ==40678== at 0x127FC07D: pipe (pipe.c:29) ==40678== by 0x1B37607D: ??? ==40678== by 0x165344CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40678== by 0x12104418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40678== by 0x1209DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40678== by 0x10D94D38: PetscInitialize (pinit.c:924) ==40678== by 0x10C6B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40678== by 0x10C6B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40678== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40678== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40678== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40678== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40678== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40678== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) ==40678== ==40678== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40678== at 0x12800A1C: __open_nocancel (open64_nocancel.c:39) ==40678== by 0x12784BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40678== by 0x6122822: ??? ==40678== by 0x612296F: ??? ==40678== by 0x165D96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40678== by 0x165D9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40678== by 0x1658F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40678== by 0x165342DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40678== by 0x12104418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40678== by 0x1209DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40678== by 0x10D94D38: PetscInitialize (pinit.c:924) ==40678== by 0x10C6B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40678== by 0x10C6B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40678== by 0x136AAD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40678== by 0x13133D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40678== by 0x1340EC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40678== by 0x133F8C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40678== by 0x134623: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40678== by 0x12F765: main (TestVanLeeuwen2009WntSwatCellCycleOdeSystem.cpp:19) ==40678== ==40678== Open file descriptor 158: ==40678== ==40678== ==40678== Open file descriptor 155: ==40678== ==40678== ==40678== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVanLeeuwen2009WntSwatCellCycleOdeSystem_valgrind.txt ==40678== ==40678== ==40678== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40678== ==40678== ==40678== ==40678== HEAP SUMMARY: ==40678== in use at exit: 618,334 bytes in 8,238 blocks ==40678== total heap usage: 519,315 allocs, 511,077 frees, 1,547,117,002 bytes allocated ==40678== ==40678== LEAK SUMMARY: ==40678== definitely lost: 0 bytes in 0 blocks ==40678== indirectly lost: 0 bytes in 0 blocks ==40678== possibly lost: 0 bytes in 0 blocks ==40678== still reachable: 24 bytes in 2 blocks ==40678== suppressed: 618,310 bytes in 8,236 blocks ==40678== Reachable blocks (those to which a pointer was found) are not shown. ==40678== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40678== ==40678== For lists of detected and suppressed errors, rerun with: -s ==40678== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)