==40389== Memcheck, a memory error detector ==40389== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40389== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40389== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40389== Parent PID: 24109 ==40389== ==40389== ==40389== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40389== Open file descriptor 12: ==40389== at 0xDB9E07D: pipe (pipe.c:29) ==40389== by 0x196B607D: ??? ==40389== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40389== by 0x114A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40389== by 0x1143BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40389== by 0x10130D38: PetscInitialize (pinit.c:924) ==40389== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40389== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40389== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40389== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40389== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40389== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40389== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40389== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==40389== ==40389== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40389== at 0xDBA2A1C: __open_nocancel (open64_nocancel.c:39) ==40389== by 0xDB26BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40389== by 0xD4DA822: ??? ==40389== by 0xD4DA96F: ??? ==40389== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40389== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40389== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40389== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40389== by 0x114A2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40389== by 0x1143BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40389== by 0x10130D38: PetscInitialize (pinit.c:924) ==40389== by 0xD49F1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40389== by 0xD49F227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40389== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40389== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40389== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40389== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40389== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40389== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==40389== ==40389== Open file descriptor 158: ==40389== ==40389== ==40389== Open file descriptor 155: ==40389== ==40389== ==40389== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt ==40389== ==40389== ==40389== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40389== ==40389== ==40389== ==40389== HEAP SUMMARY: ==40389== in use at exit: 618,281 bytes in 8,235 blocks ==40389== total heap usage: 40,687,073 allocs, 40,678,838 frees, 3,830,331,144 bytes allocated ==40389== ==40389== LEAK SUMMARY: ==40389== definitely lost: 0 bytes in 0 blocks ==40389== indirectly lost: 0 bytes in 0 blocks ==40389== possibly lost: 0 bytes in 0 blocks ==40389== still reachable: 56 bytes in 3 blocks ==40389== suppressed: 618,225 bytes in 8,232 blocks ==40389== Reachable blocks (those to which a pointer was found) are not shown. ==40389== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40389== ==40389== For lists of detected and suppressed errors, rerun with: -s ==40389== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)