==26062== Memcheck, a memory error detector ==26062== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26062== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26062== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==26062== Parent PID: 24109 ==26062== ==26062== ==26062== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26062== Open file descriptor 12: ==26062== at 0xDB5007D: pipe (pipe.c:29) ==26062== by 0x196B507D: ??? ==26062== by 0x14C774CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26062== by 0x1115B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26062== by 0x110F4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26062== by 0xFDEBD38: PetscInitialize (pinit.c:924) ==26062== by 0xD7561D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26062== by 0xD756227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26062== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26062== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26062== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26062== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26062== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26062== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26062== ==26062== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26062== at 0xDB54A1C: __open_nocancel (open64_nocancel.c:39) ==26062== by 0xDAD8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26062== by 0xD791822: ??? ==26062== by 0xD79196F: ??? ==26062== by 0x14D1C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26062== by 0x14D1C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26062== by 0x14CD2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26062== by 0x14C772DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26062== by 0x1115B418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26062== by 0x110F4D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26062== by 0xFDEBD38: PetscInitialize (pinit.c:924) ==26062== by 0xD7561D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26062== by 0xD756227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26062== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26062== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26062== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26062== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26062== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26062== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==26062== ==26062== Open file descriptor 158: ==26062== ==26062== ==26062== Open file descriptor 155: ==26062== ==26062== ==26062== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==26062== ==26062== ==26062== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26062== ==26062== ==26062== ==26062== HEAP SUMMARY: ==26062== in use at exit: 618,322 bytes in 8,238 blocks ==26062== total heap usage: 58,420 allocs, 50,182 frees, 1,339,331,972 bytes allocated ==26062== ==26062== LEAK SUMMARY: ==26062== definitely lost: 0 bytes in 0 blocks ==26062== indirectly lost: 0 bytes in 0 blocks ==26062== possibly lost: 0 bytes in 0 blocks ==26062== still reachable: 24 bytes in 2 blocks ==26062== suppressed: 618,298 bytes in 8,236 blocks ==26062== Reachable blocks (those to which a pointer was found) are not shown. ==26062== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26062== ==26062== For lists of detected and suppressed errors, rerun with: -s ==26062== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)