==40812== Memcheck, a memory error detector ==40812== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40812== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40812== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithMeshBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40812== Parent PID: 24148 ==40812== ==40812== ==40812== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40812== Open file descriptor 12: ==40812== at 0x111ED07D: pipe (pipe.c:29) ==40812== by 0x1B37607D: ??? ==40812== by 0x165854CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40812== by 0x12E49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40812== by 0x12DE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40812== by 0x11AD9D38: PetscInitialize (pinit.c:924) ==40812== by 0x109C51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40812== by 0x109C5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40812== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40812== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40812== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40812== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40812== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40812== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40812== ==40812== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40812== at 0x111F1A1C: __open_nocancel (open64_nocancel.c:39) ==40812== by 0x11175BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40812== by 0x10A00822: ??? ==40812== by 0x10A0096F: ??? ==40812== by 0x1662A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40812== by 0x1662A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40812== by 0x165E0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40812== by 0x165852DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40812== by 0x12E49418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40812== by 0x12DE2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40812== by 0x11AD9D38: PetscInitialize (pinit.c:924) ==40812== by 0x109C51D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40812== by 0x109C5227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40812== by 0x23B368: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40812== by 0x231839: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40812== by 0x235F6A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40812== by 0x235E0A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40812== by 0x2364A1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40812== by 0x22FC55: main (TestCryptSimulation2dWithMeshBasedCellPopulation.cpp:19) ==40812== ==40812== Open file descriptor 158: ==40812== ==40812== ==40812== Open file descriptor 155: ==40812== ==40812== ==40812== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithMeshBasedCellPopulation_valgrind.txt ==40812== ==40812== ==40812== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40812== ==40812== ==40812== ==40812== HEAP SUMMARY: ==40812== in use at exit: 618,297 bytes in 8,235 blocks ==40812== total heap usage: 6,320,397 allocs, 6,312,162 frees, 2,056,780,238 bytes allocated ==40812== ==40812== LEAK SUMMARY: ==40812== definitely lost: 0 bytes in 0 blocks ==40812== indirectly lost: 0 bytes in 0 blocks ==40812== possibly lost: 0 bytes in 0 blocks ==40812== still reachable: 56 bytes in 3 blocks ==40812== suppressed: 618,241 bytes in 8,232 blocks ==40812== Reachable blocks (those to which a pointer was found) are not shown. ==40812== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40812== ==40812== For lists of detected and suppressed errors, rerun with: -s ==40812== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)