==27417== Memcheck, a memory error detector ==27417== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27417== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27417== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==27417== Parent PID: 24148 ==27417== ==27417== ==27417== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27417== Open file descriptor 12: ==27417== at 0x10DE207D: pipe (pipe.c:29) ==27417== by 0x196B607D: ??? ==27417== by 0x14C1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27417== by 0x10603418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27417== by 0x1059CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27417== by 0xF293D38: PetscInitialize (pinit.c:924) ==27417== by 0xF1051D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27417== by 0xF105227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27417== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27417== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27417== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27417== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27417== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27417== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27417== ==27417== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27417== at 0x10DE6A1C: __open_nocancel (open64_nocancel.c:39) ==27417== by 0x10D6ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27417== by 0xF140822: ??? ==27417== by 0xF14096F: ??? ==27417== by 0x14CC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27417== by 0x14CC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27417== by 0x14C79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27417== by 0x14C1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27417== by 0x10603418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27417== by 0x1059CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27417== by 0xF293D38: PetscInitialize (pinit.c:924) ==27417== by 0xF1051D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27417== by 0xF105227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27417== by 0x1FFF0F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==27417== by 0x1F9AB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27417== by 0x1FD424: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27417== by 0x1FD2C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27417== by 0x1FD95B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27417== by 0x1F7ED5: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==27417== ==27417== Open file descriptor 158: ==27417== ==27417== ==27417== Open file descriptor 155: ==27417== ==27417== ==27417== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt ==27417== ==27417== ==27417== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27417== ==27417== ==27417== ==27417== HEAP SUMMARY: ==27417== in use at exit: 618,281 bytes in 8,235 blocks ==27417== total heap usage: 9,703,047 allocs, 9,694,812 frees, 2,583,541,263 bytes allocated ==27417== ==27417== LEAK SUMMARY: ==27417== definitely lost: 0 bytes in 0 blocks ==27417== indirectly lost: 0 bytes in 0 blocks ==27417== possibly lost: 0 bytes in 0 blocks ==27417== still reachable: 56 bytes in 3 blocks ==27417== suppressed: 618,225 bytes in 8,232 blocks ==27417== Reachable blocks (those to which a pointer was found) are not shown. ==27417== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27417== ==27417== For lists of detected and suppressed errors, rerun with: -s ==27417== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)