==40406== Memcheck, a memory error detector ==40406== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40406== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40406== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40406== Parent PID: 24107 ==40406== ==40406== ==40406== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40406== Open file descriptor 12: ==40406== at 0xF92F07D: pipe (pipe.c:29) ==40406== by 0x196FE07D: ??? ==40406== by 0x14D0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40406== by 0x115CF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40406== by 0x11568D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40406== by 0x1025FD38: PetscInitialize (pinit.c:924) ==40406== by 0xF14B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40406== by 0xF14B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40406== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40406== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40406== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40406== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40406== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40406== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40406== ==40406== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40406== at 0xF933A1C: __open_nocancel (open64_nocancel.c:39) ==40406== by 0xF8B7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40406== by 0xF180822: ??? ==40406== by 0xF18096F: ??? ==40406== by 0x14DAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40406== by 0x14DAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40406== by 0x14D65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40406== by 0x14D0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40406== by 0x115CF418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40406== by 0x11568D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40406== by 0x1025FD38: PetscInitialize (pinit.c:924) ==40406== by 0xF14B1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40406== by 0xF14B227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40406== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40406== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40406== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40406== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40406== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40406== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==40406== ==40406== Open file descriptor 158: ==40406== ==40406== ==40406== Open file descriptor 155: ==40406== ==40406== ==40406== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==40406== ==40406== ==40406== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40406== ==40406== ==40406== ==40406== HEAP SUMMARY: ==40406== in use at exit: 618,366 bytes in 8,239 blocks ==40406== total heap usage: 721,829 allocs, 713,590 frees, 1,725,228,587 bytes allocated ==40406== ==40406== LEAK SUMMARY: ==40406== definitely lost: 0 bytes in 0 blocks ==40406== indirectly lost: 0 bytes in 0 blocks ==40406== possibly lost: 0 bytes in 0 blocks ==40406== still reachable: 56 bytes in 3 blocks ==40406== suppressed: 618,310 bytes in 8,236 blocks ==40406== Reachable blocks (those to which a pointer was found) are not shown. ==40406== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40406== ==40406== For lists of detected and suppressed errors, rerun with: -s ==40406== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)