==25996== Memcheck, a memory error detector ==25996== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==25996== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==25996== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==25996== Parent PID: 24107 ==25996== ==25996== ==25996== FILE DESCRIPTORS: 9 open (3 std) at exit. ==25996== Open file descriptor 12: ==25996== at 0xDB9707D: pipe (pipe.c:29) ==25996== by 0x196FF07D: ??? ==25996== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25996== by 0x111A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25996== by 0x1113AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25996== by 0xFE31D38: PetscInitialize (pinit.c:924) ==25996== by 0xD79D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25996== by 0xD79D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25996== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25996== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25996== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25996== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25996== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25996== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==25996== ==25996== Open file descriptor 8: /dev/shm/open_mpi.0000 ==25996== at 0xDB9BA1C: __open_nocancel (open64_nocancel.c:39) ==25996== by 0xDB1FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==25996== by 0xD7D2822: ??? ==25996== by 0xD7D296F: ??? ==25996== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25996== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25996== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==25996== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==25996== by 0x111A1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25996== by 0x1113AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==25996== by 0xFE31D38: PetscInitialize (pinit.c:924) ==25996== by 0xD79D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==25996== by 0xD79D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==25996== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==25996== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==25996== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==25996== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==25996== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==25996== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==25996== ==25996== Open file descriptor 158: ==25996== ==25996== ==25996== Open file descriptor 155: ==25996== ==25996== ==25996== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==25996== ==25996== ==25996== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==25996== ==25996== ==25996== ==25996== HEAP SUMMARY: ==25996== in use at exit: 618,334 bytes in 8,238 blocks ==25996== total heap usage: 58,391 allocs, 50,153 frees, 1,339,329,760 bytes allocated ==25996== ==25996== LEAK SUMMARY: ==25996== definitely lost: 0 bytes in 0 blocks ==25996== indirectly lost: 0 bytes in 0 blocks ==25996== possibly lost: 0 bytes in 0 blocks ==25996== still reachable: 24 bytes in 2 blocks ==25996== suppressed: 618,310 bytes in 8,236 blocks ==25996== Reachable blocks (those to which a pointer was found) are not shown. ==25996== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==25996== ==25996== For lists of detected and suppressed errors, rerun with: -s ==25996== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)