==26223== Memcheck, a memory error detector ==26223== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26223== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26223== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==26223== Parent PID: 24123 ==26223== ==26223== ==26223== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26223== Open file descriptor 12: ==26223== at 0xF91B07D: pipe (pipe.c:29) ==26223== by 0x196FB07D: ??? ==26223== by 0x14D0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26223== by 0x114E8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26223== by 0x11481D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26223== by 0x10176D38: PetscInitialize (pinit.c:924) ==26223== by 0xF1DA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26223== by 0xF1DA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26223== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26223== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26223== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26223== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26223== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26223== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) ==26223== ==26223== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26223== at 0xF91FA1C: __open_nocancel (open64_nocancel.c:39) ==26223== by 0xF8A3BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26223== by 0xF215822: ??? ==26223== by 0xF21596F: ??? ==26223== by 0x14DAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26223== by 0x14DAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26223== by 0x14D65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26223== by 0x14D0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26223== by 0x114E8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26223== by 0x11481D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26223== by 0x10176D38: PetscInitialize (pinit.c:924) ==26223== by 0xF1DA1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26223== by 0xF1DA227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26223== by 0x2E2582: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26223== by 0x2D9079: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26223== by 0x2DD8D6: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26223== by 0x2DD776: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26223== by 0x2DDE0D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26223== by 0x2D7495: main (TestNodeBasedCellPopulation.cpp:19) ==26223== ==26223== Open file descriptor 158: ==26223== ==26223== ==26223== Open file descriptor 155: ==26223== ==26223== ==26223== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulation_valgrind.txt ==26223== ==26223== ==26223== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26223== ==26223== ==26223== ==26223== HEAP SUMMARY: ==26223== in use at exit: 618,281 bytes in 8,235 blocks ==26223== total heap usage: 20,193,197 allocs, 20,184,962 frees, 2,562,983,709 bytes allocated ==26223== ==26223== LEAK SUMMARY: ==26223== definitely lost: 0 bytes in 0 blocks ==26223== indirectly lost: 0 bytes in 0 blocks ==26223== possibly lost: 0 bytes in 0 blocks ==26223== still reachable: 56 bytes in 3 blocks ==26223== suppressed: 618,225 bytes in 8,232 blocks ==26223== Reachable blocks (those to which a pointer was found) are not shown. ==26223== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26223== ==26223== For lists of detected and suppressed errors, rerun with: -s ==26223== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)