==39979== Memcheck, a memory error detector ==39979== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==39979== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==39979== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCreatingAndUsingANewSrnModelTutorial -malloc_debug -malloc_dump -memory_info ==39979== Parent PID: 24005 ==39979== ==39979== ==39979== FILE DESCRIPTORS: 9 open (3 std) at exit. ==39979== Open file descriptor 12: ==39979== at 0x1106A07D: pipe (pipe.c:29) ==39979== by 0x196FF07D: ??? ==39979== by 0x14CB54CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39979== by 0x10849418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39979== by 0x107E2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39979== by 0xF4B6D38: PetscInitialize (pinit.c:924) ==39979== by 0xF38D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39979== by 0xF38D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39979== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39979== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39979== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39979== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39979== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39979== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==39979== ==39979== Open file descriptor 8: /dev/shm/open_mpi.0000 ==39979== at 0x1106EA1C: __open_nocancel (open64_nocancel.c:39) ==39979== by 0x10FF2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==39979== by 0x10740822: ??? ==39979== by 0x1074096F: ??? ==39979== by 0x14D5A6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39979== by 0x14D5A938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39979== by 0x14D10922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==39979== by 0x14CB52DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==39979== by 0x10849418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39979== by 0x107E2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==39979== by 0xF4B6D38: PetscInitialize (pinit.c:924) ==39979== by 0xF38D1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==39979== by 0xF38D227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==39979== by 0x261089: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==39979== by 0x25978B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==39979== by 0x25E30E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==39979== by 0x25E1AF: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==39979== by 0x25E845: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==39979== by 0x255DF5: main (TestCreatingAndUsingANewSrnModelTutorial.cpp:19) ==39979== ==39979== Open file descriptor 158: ==39979== ==39979== ==39979== Open file descriptor 155: ==39979== ==39979== ==39979== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCreatingAndUsingANewSrnModelTutorial_valgrind.txt ==39979== ==39979== ==39979== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==39979== ==39979== ==39979== ==39979== HEAP SUMMARY: ==39979== in use at exit: 618,297 bytes in 8,235 blocks ==39979== total heap usage: 3,817,471 allocs, 3,809,236 frees, 1,509,512,539 bytes allocated ==39979== ==39979== LEAK SUMMARY: ==39979== definitely lost: 0 bytes in 0 blocks ==39979== indirectly lost: 0 bytes in 0 blocks ==39979== possibly lost: 0 bytes in 0 blocks ==39979== still reachable: 56 bytes in 3 blocks ==39979== suppressed: 618,241 bytes in 8,232 blocks ==39979== Reachable blocks (those to which a pointer was found) are not shown. ==39979== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==39979== ==39979== For lists of detected and suppressed errors, rerun with: -s ==39979== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)