==40563== Memcheck, a memory error detector ==40563== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40563== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40563== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation1d -malloc_debug -malloc_dump -memory_info ==40563== Parent PID: 24005 ==40563== ==40563== ==40563== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40563== Open file descriptor 12: ==40563== at 0x1260107D: pipe (pipe.c:29) ==40563== by 0x1B3BF07D: ??? ==40563== by 0x165214CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40563== by 0x11F09418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40563== by 0x11EA2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40563== by 0x10B99D38: PetscInitialize (pinit.c:924) ==40563== by 0x10A701D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40563== by 0x10A70227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40563== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40563== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40563== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40563== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40563== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40563== by 0x21B395: main (TestCryptSimulation1d.cpp:18) ==40563== ==40563== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40563== at 0x12605A1C: __open_nocancel (open64_nocancel.c:39) ==40563== by 0x12589BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40563== by 0x611C822: ??? ==40563== by 0x611C96F: ??? ==40563== by 0x165C86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40563== by 0x165C8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40563== by 0x1657E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40563== by 0x165212DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40563== by 0x11F09418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40563== by 0x11EA2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40563== by 0x10B99D38: PetscInitialize (pinit.c:924) ==40563== by 0x10A701D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40563== by 0x10A70227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40563== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40563== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40563== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40563== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40563== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40563== by 0x21B395: main (TestCryptSimulation1d.cpp:18) ==40563== ==40563== Open file descriptor 158: ==40563== ==40563== ==40563== Open file descriptor 155: ==40563== ==40563== ==40563== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation1d_valgrind.txt ==40563== ==40563== ==40563== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40563== ==40563== ==40563== ==40563== HEAP SUMMARY: ==40563== in use at exit: 618,313 bytes in 8,235 blocks ==40563== total heap usage: 4,119,297 allocs, 4,111,062 frees, 1,972,587,276 bytes allocated ==40563== ==40563== LEAK SUMMARY: ==40563== definitely lost: 0 bytes in 0 blocks ==40563== indirectly lost: 0 bytes in 0 blocks ==40563== possibly lost: 0 bytes in 0 blocks ==40563== still reachable: 56 bytes in 3 blocks ==40563== suppressed: 618,257 bytes in 8,232 blocks ==40563== Reachable blocks (those to which a pointer was found) are not shown. ==40563== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40563== ==40563== For lists of detected and suppressed errors, rerun with: -s ==40563== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)