==29620== Memcheck, a memory error detector ==29620== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==29620== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==29620== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==29620== Parent PID: 24005 ==29620== ==29620== ==29620== FILE DESCRIPTORS: 9 open (3 std) at exit. ==29620== Open file descriptor 12: ==29620== at 0xFCCE07D: pipe (pipe.c:29) ==29620== by 0x196FE07D: ??? ==29620== by 0x14D034CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==29620== by 0x1158D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==29620== by 0x11526D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==29620== by 0x1021BD38: PetscInitialize (pinit.c:924) ==29620== by 0xF4E81D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==29620== by 0xF4E8227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==29620== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==29620== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==29620== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==29620== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==29620== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==29620== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==29620== ==29620== Open file descriptor 8: /dev/shm/open_mpi.0000 ==29620== at 0xFCD2A1C: __open_nocancel (open64_nocancel.c:39) ==29620== by 0xFC56BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==29620== by 0xF51D822: ??? ==29620== by 0xF51D96F: ??? ==29620== by 0x14DA86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==29620== by 0x14DA8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==29620== by 0x14D5E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==29620== by 0x14D032DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==29620== by 0x1158D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==29620== by 0x11526D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==29620== by 0x1021BD38: PetscInitialize (pinit.c:924) ==29620== by 0xF4E81D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==29620== by 0xF4E8227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==29620== by 0x135832: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==29620== by 0x1303C3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==29620== by 0x133048: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==29620== by 0x132EE8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==29620== by 0x13357F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==29620== by 0x12E7B5: main (TestOnLatticeSimulationWithPdes.cpp:19) ==29620== ==29620== Open file descriptor 158: ==29620== ==29620== ==29620== Open file descriptor 155: ==29620== ==29620== ==29620== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithPdes_valgrind.txt ==29620== ==29620== ==29620== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==29620== ==29620== ==29620== ==29620== HEAP SUMMARY: ==29620== in use at exit: 618,297 bytes in 8,235 blocks ==29620== total heap usage: 2,403,733 allocs, 2,395,498 frees, 1,794,567,630 bytes allocated ==29620== ==29620== LEAK SUMMARY: ==29620== definitely lost: 0 bytes in 0 blocks ==29620== indirectly lost: 0 bytes in 0 blocks ==29620== possibly lost: 0 bytes in 0 blocks ==29620== still reachable: 56 bytes in 3 blocks ==29620== suppressed: 618,241 bytes in 8,232 blocks ==29620== Reachable blocks (those to which a pointer was found) are not shown. ==29620== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==29620== ==29620== For lists of detected and suppressed errors, rerun with: -s ==29620== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 31 from 31)