==26021== Memcheck, a memory error detector ==26021== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26021== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26021== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaUpdateRules -malloc_debug -malloc_dump -memory_info ==26021== Parent PID: 24091 ==26021== ==26021== ==26021== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26021== Open file descriptor 12: ==26021== at 0xDC2707D: pipe (pipe.c:29) ==26021== by 0x196FB07D: ??? ==26021== by 0x14D0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26021== by 0x114E8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26021== by 0x11481D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26021== by 0x10178D38: PetscInitialize (pinit.c:924) ==26021== by 0xD4E61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26021== by 0xD4E6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26021== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26021== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26021== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26021== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26021== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26021== by 0x12A645: main (TestCaUpdateRules.cpp:18) ==26021== ==26021== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26021== at 0xDC2BA1C: __open_nocancel (open64_nocancel.c:39) ==26021== by 0xDBAFBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26021== by 0xD521822: ??? ==26021== by 0xD52196F: ??? ==26021== by 0x14DAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26021== by 0x14DAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26021== by 0x14D65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26021== by 0x14D0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26021== by 0x114E8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26021== by 0x11481D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26021== by 0x10178D38: PetscInitialize (pinit.c:924) ==26021== by 0xD4E61D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26021== by 0xD4E6227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26021== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==26021== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26021== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26021== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26021== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26021== by 0x12A645: main (TestCaUpdateRules.cpp:18) ==26021== ==26021== Open file descriptor 158: ==26021== ==26021== ==26021== Open file descriptor 155: ==26021== ==26021== ==26021== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaUpdateRules_valgrind.txt ==26021== ==26021== ==26021== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26021== ==26021== ==26021== ==26021== HEAP SUMMARY: ==26021== in use at exit: 618,350 bytes in 8,239 blocks ==26021== total heap usage: 55,730 allocs, 47,491 frees, 1,339,215,181 bytes allocated ==26021== ==26021== LEAK SUMMARY: ==26021== definitely lost: 0 bytes in 0 blocks ==26021== indirectly lost: 0 bytes in 0 blocks ==26021== possibly lost: 0 bytes in 0 blocks ==26021== still reachable: 56 bytes in 3 blocks ==26021== suppressed: 618,294 bytes in 8,236 blocks ==26021== Reachable blocks (those to which a pointer was found) are not shown. ==26021== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26021== ==26021== For lists of detected and suppressed errors, rerun with: -s ==26021== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)