==40847== Memcheck, a memory error detector ==40847== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40847== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40847== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40847== Parent PID: 24105 ==40847== ==40847== ==40847== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40847== Open file descriptor 12: ==40847== at 0x1260207D: pipe (pipe.c:29) ==40847== by 0x1B3BE07D: ??? ==40847== by 0x165234CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40847== by 0x11F0A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40847== by 0x11EA3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40847== by 0x10B9AD38: PetscInitialize (pinit.c:924) ==40847== by 0x10A0C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40847== by 0x10A0C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40847== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40847== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40847== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40847== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40847== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40847== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40847== ==40847== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40847== at 0x12606A1C: __open_nocancel (open64_nocancel.c:39) ==40847== by 0x1258ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40847== by 0x10A47822: ??? ==40847== by 0x10A4796F: ??? ==40847== by 0x165CA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40847== by 0x165CA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40847== by 0x16580922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40847== by 0x165232DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40847== by 0x11F0A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40847== by 0x11EA3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40847== by 0x10B9AD38: PetscInitialize (pinit.c:924) ==40847== by 0x10A0C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40847== by 0x10A0C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40847== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40847== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40847== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40847== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40847== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40847== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40847== ==40847== Open file descriptor 158: ==40847== ==40847== ==40847== Open file descriptor 155: ==40847== ==40847== ==40847== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==40847== ==40847== ==40847== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40847== ==40847== ==40847== ==40847== HEAP SUMMARY: ==40847== in use at exit: 618,295 bytes in 8,235 blocks ==40847== total heap usage: 3,713,924 allocs, 3,705,689 frees, 1,620,345,804 bytes allocated ==40847== ==40847== LEAK SUMMARY: ==40847== definitely lost: 0 bytes in 0 blocks ==40847== indirectly lost: 0 bytes in 0 blocks ==40847== possibly lost: 0 bytes in 0 blocks ==40847== still reachable: 56 bytes in 3 blocks ==40847== suppressed: 618,239 bytes in 8,232 blocks ==40847== Reachable blocks (those to which a pointer was found) are not shown. ==40847== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40847== ==40847== For lists of detected and suppressed errors, rerun with: -s ==40847== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)