==26729== Memcheck, a memory error detector ==26729== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==26729== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==26729== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==26729== Parent PID: 24105 ==26729== ==26729== ==26729== FILE DESCRIPTORS: 9 open (3 std) at exit. ==26729== Open file descriptor 12: ==26729== at 0x10E2907D: pipe (pipe.c:29) ==26729== by 0x196FC07D: ??? ==26729== by 0x14C6C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26729== by 0x1064A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26729== by 0x105E3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26729== by 0xF2DAD38: PetscInitialize (pinit.c:924) ==26729== by 0xF14C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26729== by 0xF14C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26729== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26729== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26729== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26729== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26729== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26729== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==26729== ==26729== Open file descriptor 8: /dev/shm/open_mpi.0000 ==26729== at 0x10E2DA1C: __open_nocancel (open64_nocancel.c:39) ==26729== by 0x10DB1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==26729== by 0xF187822: ??? ==26729== by 0xF18796F: ??? ==26729== by 0x14D116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26729== by 0x14D11938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26729== by 0x14CC7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==26729== by 0x14C6C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==26729== by 0x1064A418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26729== by 0x105E3D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==26729== by 0xF2DAD38: PetscInitialize (pinit.c:924) ==26729== by 0xF14C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==26729== by 0xF14C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==26729== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==26729== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==26729== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==26729== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==26729== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==26729== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==26729== ==26729== Open file descriptor 158: ==26729== ==26729== ==26729== Open file descriptor 155: ==26729== ==26729== ==26729== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==26729== ==26729== ==26729== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==26729== ==26729== ==26729== ==26729== HEAP SUMMARY: ==26729== in use at exit: 618,350 bytes in 8,239 blocks ==26729== total heap usage: 868,185 allocs, 859,946 frees, 1,504,067,135 bytes allocated ==26729== ==26729== LEAK SUMMARY: ==26729== definitely lost: 0 bytes in 0 blocks ==26729== indirectly lost: 0 bytes in 0 blocks ==26729== possibly lost: 0 bytes in 0 blocks ==26729== still reachable: 56 bytes in 3 blocks ==26729== suppressed: 618,294 bytes in 8,236 blocks ==26729== Reachable blocks (those to which a pointer was found) are not shown. ==26729== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==26729== ==26729== For lists of detected and suppressed errors, rerun with: -s ==26729== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)