==40343== Memcheck, a memory error detector ==40343== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40343== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40343== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningMeshBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40343== Parent PID: 24105 ==40343== ==40343== ==40343== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40343== Open file descriptor 12: ==40343== at 0x10D0007D: pipe (pipe.c:29) ==40343== by 0x196FC07D: ??? ==40343== by 0x14C6C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40343== by 0x10608418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40343== by 0x105A1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40343== by 0xF275D38: PetscInitialize (pinit.c:924) ==40343== by 0xF14C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40343== by 0xF14C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40343== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40343== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40343== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40343== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40343== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40343== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==40343== ==40343== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40343== at 0x10D04A1C: __open_nocancel (open64_nocancel.c:39) ==40343== by 0x10C88BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40343== by 0x10505822: ??? ==40343== by 0x1050596F: ??? ==40343== by 0x14D116DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40343== by 0x14D11938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40343== by 0x14CC7922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40343== by 0x14C6C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40343== by 0x10608418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40343== by 0x105A1D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40343== by 0xF275D38: PetscInitialize (pinit.c:924) ==40343== by 0xF14C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40343== by 0xF14C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40343== by 0x1222CD: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40343== by 0x11D84D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40343== by 0x11FE3C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40343== by 0x11FCDC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40343== by 0x120373: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40343== by 0x11BC75: main (TestRunningMeshBasedSimulationsTutorial.cpp:19) ==40343== ==40343== Open file descriptor 158: ==40343== ==40343== ==40343== Open file descriptor 155: ==40343== ==40343== ==40343== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedSimulationsTutorial_valgrind.txt ==40343== ==40343== ==40343== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40343== ==40343== ==40343== ==40343== HEAP SUMMARY: ==40343== in use at exit: 618,279 bytes in 8,235 blocks ==40343== total heap usage: 3,498,741 allocs, 3,490,506 frees, 2,269,726,327 bytes allocated ==40343== ==40343== LEAK SUMMARY: ==40343== definitely lost: 0 bytes in 0 blocks ==40343== indirectly lost: 0 bytes in 0 blocks ==40343== possibly lost: 0 bytes in 0 blocks ==40343== still reachable: 56 bytes in 3 blocks ==40343== suppressed: 618,223 bytes in 8,232 blocks ==40343== Reachable blocks (those to which a pointer was found) are not shown. ==40343== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40343== ==40343== For lists of detected and suppressed errors, rerun with: -s ==40343== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)