==43917== Memcheck, a memory error detector ==43917== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==43917== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==43917== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestHdf5ToVisualizerConverters -malloc_debug -malloc_dump -memory_info ==43917== Parent PID: 24055 ==43917== ==43917== ==43917== FILE DESCRIPTORS: 9 open (3 std) at exit. ==43917== Open file descriptor 12: ==43917== at 0xA8B707D: pipe (pipe.c:29) ==43917== by 0x1433407D: ??? ==43917== by 0xFB384CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43917== by 0xBFB0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43917== by 0xBF49D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43917== by 0xAC40D38: PetscInitialize (pinit.c:924) ==43917== by 0xA19E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43917== by 0xA19E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43917== by 0x124324: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43917== by 0x11DB0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43917== by 0x120564: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43917== by 0x120404: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43917== by 0x120A9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43917== by 0x11BF35: main (TestHdf5ToVisualizerConverters.cpp:19) ==43917== ==43917== Open file descriptor 8: /dev/shm/open_mpi.0000 ==43917== at 0xA8BBA1C: __open_nocancel (open64_nocancel.c:39) ==43917== by 0xA83FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==43917== by 0xA1D3822: ??? ==43917== by 0xA1D396F: ??? ==43917== by 0xFBDD6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43917== by 0xFBDD938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43917== by 0xFB93922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==43917== by 0xFB382DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==43917== by 0xBFB0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43917== by 0xBF49D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==43917== by 0xAC40D38: PetscInitialize (pinit.c:924) ==43917== by 0xA19E1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==43917== by 0xA19E227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==43917== by 0x124324: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==43917== by 0x11DB0D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==43917== by 0x120564: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==43917== by 0x120404: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==43917== by 0x120A9B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==43917== by 0x11BF35: main (TestHdf5ToVisualizerConverters.cpp:19) ==43917== ==43917== Open file descriptor 158: ==43917== ==43917== ==43917== Open file descriptor 155: ==43917== ==43917== ==43917== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5ToVisualizerConverters_valgrind.txt ==43917== ==43917== ==43917== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==43917== ==43917== ==43917== ==43917== HEAP SUMMARY: ==43917== in use at exit: 618,350 bytes in 8,238 blocks ==43917== total heap usage: 120,271 allocs, 112,033 frees, 1,366,212,599 bytes allocated ==43917== ==43917== LEAK SUMMARY: ==43917== definitely lost: 0 bytes in 0 blocks ==43917== indirectly lost: 0 bytes in 0 blocks ==43917== possibly lost: 0 bytes in 0 blocks ==43917== still reachable: 24 bytes in 2 blocks ==43917== suppressed: 618,326 bytes in 8,236 blocks ==43917== Reachable blocks (those to which a pointer was found) are not shown. ==43917== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==43917== ==43917== For lists of detected and suppressed errors, rerun with: -s ==43917== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 34 from 34)