==41332== Memcheck, a memory error detector ==41332== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41332== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41332== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==41332== Parent PID: 24145 ==41332== ==41332== ==41332== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41332== Open file descriptor 12: ==41332== at 0x125C007D: pipe (pipe.c:29) ==41332== by 0x1B3C107D: ??? ==41332== by 0x165234CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41332== by 0x11EC8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41332== by 0x11E61D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41332== by 0x10B35D38: PetscInitialize (pinit.c:924) ==41332== by 0x10A0C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41332== by 0x10A0C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41332== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41332== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41332== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41332== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41332== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41332== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==41332== ==41332== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41332== at 0x125C4A1C: __open_nocancel (open64_nocancel.c:39) ==41332== by 0x12548BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41332== by 0x11DBF822: ??? ==41332== by 0x11DBF96F: ??? ==41332== by 0x165CA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41332== by 0x165CA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41332== by 0x16580922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41332== by 0x165232DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41332== by 0x11EC8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41332== by 0x11E61D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41332== by 0x10B35D38: PetscInitialize (pinit.c:924) ==41332== by 0x10A0C1D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41332== by 0x10A0C227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41332== by 0x120E0B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==41332== by 0x11C633: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41332== by 0x11E8CE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41332== by 0x11E7CA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41332== by 0x11EDDD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41332== by 0x11AE35: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18) ==41332== ==41332== Open file descriptor 158: ==41332== ==41332== ==41332== Open file descriptor 155: ==41332== ==41332== ==41332== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningMeshBasedCryptSimulationsTutorial_valgrind.txt ==41332== ==41332== ==41332== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41332== ==41332== ==41332== ==41332== HEAP SUMMARY: ==41332== in use at exit: 618,386 bytes in 8,239 blocks ==41332== total heap usage: 1,754,058 allocs, 1,745,819 frees, 1,514,918,029 bytes allocated ==41332== ==41332== LEAK SUMMARY: ==41332== definitely lost: 0 bytes in 0 blocks ==41332== indirectly lost: 0 bytes in 0 blocks ==41332== possibly lost: 0 bytes in 0 blocks ==41332== still reachable: 56 bytes in 3 blocks ==41332== suppressed: 618,330 bytes in 8,236 blocks ==41332== Reachable blocks (those to which a pointer was found) are not shown. ==41332== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41332== ==41332== For lists of detected and suppressed errors, rerun with: -s ==41332== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)