==27014== Memcheck, a memory error detector ==27014== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==27014== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==27014== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==27014== Parent PID: 24106 ==27014== ==27014== ==27014== FILE DESCRIPTORS: 9 open (3 std) at exit. ==27014== Open file descriptor 12: ==27014== at 0xF92F07D: pipe (pipe.c:29) ==27014== by 0x196FE07D: ??? ==27014== by 0x14D0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27014== by 0x1158D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27014== by 0x11526D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27014== by 0x1021BD38: PetscInitialize (pinit.c:924) ==27014== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27014== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27014== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27014== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27014== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27014== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27014== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27014== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==27014== ==27014== Open file descriptor 8: /dev/shm/open_mpi.0000 ==27014== at 0xF933A1C: __open_nocancel (open64_nocancel.c:39) ==27014== by 0xF8B7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==27014== by 0xF180822: ??? ==27014== by 0xF18096F: ??? ==27014== by 0x14DAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27014== by 0x14DAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27014== by 0x14D65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==27014== by 0x14D0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==27014== by 0x1158D418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27014== by 0x11526D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==27014== by 0x1021BD38: PetscInitialize (pinit.c:924) ==27014== by 0xF14C079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==27014== by 0xF14C0C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==27014== by 0x13385A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==27014== by 0x12E813: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==27014== by 0x130FCC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==27014== by 0x130EC7: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==27014== by 0x1314DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==27014== by 0x12D015: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==27014== ==27014== Open file descriptor 158: ==27014== ==27014== ==27014== Open file descriptor 155: ==27014== ==27014== ==27014== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==27014== ==27014== ==27014== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==27014== ==27014== ==27014== ==27014== HEAP SUMMARY: ==27014== in use at exit: 618,295 bytes in 8,235 blocks ==27014== total heap usage: 7,117,360 allocs, 7,109,125 frees, 8,996,579,911 bytes allocated ==27014== ==27014== LEAK SUMMARY: ==27014== definitely lost: 0 bytes in 0 blocks ==27014== indirectly lost: 0 bytes in 0 blocks ==27014== possibly lost: 0 bytes in 0 blocks ==27014== still reachable: 56 bytes in 3 blocks ==27014== suppressed: 618,239 bytes in 8,232 blocks ==27014== Reachable blocks (those to which a pointer was found) are not shown. ==27014== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==27014== ==27014== For lists of detected and suppressed errors, rerun with: -s ==27014== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 32 from 32)