==40988== Memcheck, a memory error detector ==40988== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40988== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40988== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==40988== Parent PID: 24246 ==40988== ==40988== ==40988== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40988== Open file descriptor 12: ==40988== at 0x1260107D: pipe (pipe.c:29) ==40988== by 0x1B3BF07D: ??? ==40988== by 0x165214CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40988== by 0x11F09418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40988== by 0x11EA2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40988== by 0x10B99D38: PetscInitialize (pinit.c:924) ==40988== by 0x10A71079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40988== by 0x10A710C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40988== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40988== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40988== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40988== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40988== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40988== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40988== ==40988== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40988== at 0x12605A1C: __open_nocancel (open64_nocancel.c:39) ==40988== by 0x12589BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40988== by 0x611C822: ??? ==40988== by 0x611C96F: ??? ==40988== by 0x165C86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40988== by 0x165C8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40988== by 0x1657E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40988== by 0x165212DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40988== by 0x11F09418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40988== by 0x11EA2D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40988== by 0x10B99D38: PetscInitialize (pinit.c:924) ==40988== by 0x10A71079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40988== by 0x10A710C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40988== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==40988== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40988== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40988== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40988== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40988== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==40988== ==40988== Open file descriptor 158: ==40988== ==40988== ==40988== Open file descriptor 155: ==40988== ==40988== ==40988== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==40988== ==40988== ==40988== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40988== ==40988== ==40988== ==40988== HEAP SUMMARY: ==40988== in use at exit: 618,311 bytes in 8,235 blocks ==40988== total heap usage: 3,713,923 allocs, 3,705,688 frees, 1,620,345,610 bytes allocated ==40988== ==40988== LEAK SUMMARY: ==40988== definitely lost: 0 bytes in 0 blocks ==40988== indirectly lost: 0 bytes in 0 blocks ==40988== possibly lost: 0 bytes in 0 blocks ==40988== still reachable: 56 bytes in 3 blocks ==40988== suppressed: 618,255 bytes in 8,232 blocks ==40988== Reachable blocks (those to which a pointer was found) are not shown. ==40988== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40988== ==40988== For lists of detected and suppressed errors, rerun with: -s ==40988== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)