==40527== Memcheck, a memory error detector ==40527== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==40527== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==40527== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningPottsBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==40527== Parent PID: 24246 ==40527== ==40527== ==40527== FILE DESCRIPTORS: 9 open (3 std) at exit. ==40527== Open file descriptor 12: ==40527== at 0xDBE407D: pipe (pipe.c:29) ==40527== by 0x196FE07D: ??? ==40527== by 0x14D0A4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40527== by 0x114A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40527== by 0x1143DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40527== by 0x10134D38: PetscInitialize (pinit.c:924) ==40527== by 0xD4E6079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40527== by 0xD4E60C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40527== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40527== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40527== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40527== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40527== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40527== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==40527== ==40527== Open file descriptor 8: /dev/shm/open_mpi.0000 ==40527== at 0xDBE8A1C: __open_nocancel (open64_nocancel.c:39) ==40527== by 0xDB6CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==40527== by 0xD51A822: ??? ==40527== by 0xD51A96F: ??? ==40527== by 0x14DAF6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40527== by 0x14DAF938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40527== by 0x14D65922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==40527== by 0x14D0A2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==40527== by 0x114A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40527== by 0x1143DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==40527== by 0x10134D38: PetscInitialize (pinit.c:924) ==40527== by 0xD4E6079: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==40527== by 0xD4E60C7: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==40527== by 0x124714: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==40527== by 0x11FC2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==40527== by 0x12224E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==40527== by 0x1220EE: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==40527== by 0x122785: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==40527== by 0x11E055: main (TestRunningPottsBasedSimulationsTutorial.cpp:19) ==40527== ==40527== Open file descriptor 158: ==40527== ==40527== ==40527== Open file descriptor 155: ==40527== ==40527== ==40527== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningPottsBasedSimulationsTutorial_valgrind.txt ==40527== ==40527== ==40527== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==40527== ==40527== ==40527== ==40527== HEAP SUMMARY: ==40527== in use at exit: 618,295 bytes in 8,235 blocks ==40527== total heap usage: 40,687,048 allocs, 40,678,813 frees, 3,830,330,416 bytes allocated ==40527== ==40527== LEAK SUMMARY: ==40527== definitely lost: 0 bytes in 0 blocks ==40527== indirectly lost: 0 bytes in 0 blocks ==40527== possibly lost: 0 bytes in 0 blocks ==40527== still reachable: 56 bytes in 3 blocks ==40527== suppressed: 618,239 bytes in 8,232 blocks ==40527== Reachable blocks (those to which a pointer was found) are not shown. ==40527== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==40527== ==40527== For lists of detected and suppressed errors, rerun with: -s ==40527== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)