==41643== Memcheck, a memory error detector ==41643== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==41643== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==41643== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestBidomainProblem -malloc_debug -malloc_dump -memory_info ==41643== Parent PID: 24180 ==41643== ==41643== ==41643== FILE DESCRIPTORS: 9 open (3 std) at exit. ==41643== Open file descriptor 12: ==41643== at 0xC0F407D: pipe (pipe.c:29) ==41643== by 0x1433107D: ??? ==41643== by 0xFAEB4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41643== by 0xB9E2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41643== by 0xB97BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41643== by 0xA672D38: PetscInitialize (pinit.c:924) ==41643== by 0xA5491D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41643== by 0xA549227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41643== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41643== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41643== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41643== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41643== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41643== by 0x138285: main (TestBidomainProblem.cpp:19) ==41643== ==41643== Open file descriptor 8: /dev/shm/open_mpi.0000 ==41643== at 0xC0F8A1C: __open_nocancel (open64_nocancel.c:39) ==41643== by 0xC07CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==41643== by 0x8103822: ??? ==41643== by 0x810396F: ??? ==41643== by 0xFB906DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41643== by 0xFB90938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41643== by 0xFB46922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==41643== by 0xFAEB2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==41643== by 0xB9E2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41643== by 0xB97BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==41643== by 0xA672D38: PetscInitialize (pinit.c:924) ==41643== by 0xA5491D9: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==41643== by 0xA549227: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==41643== by 0x140846: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==41643== by 0x139FFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==41643== by 0x13D6D8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==41643== by 0x13D578: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==41643== by 0x13DC0F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==41643== by 0x138285: main (TestBidomainProblem.cpp:19) ==41643== ==41643== Open file descriptor 158: ==41643== ==41643== ==41643== Open file descriptor 155: ==41643== ==41643== ==41643== Open file descriptor 4: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestBidomainProblem_valgrind.txt ==41643== ==41643== ==41643== Open file descriptor 3: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==41643== ==41643== ==41643== ==41643== HEAP SUMMARY: ==41643== in use at exit: 618,883 bytes in 8,249 blocks ==41643== total heap usage: 584,918 allocs, 576,669 frees, 1,549,324,637 bytes allocated ==41643== ==41643== LEAK SUMMARY: ==41643== definitely lost: 0 bytes in 0 blocks ==41643== indirectly lost: 0 bytes in 0 blocks ==41643== possibly lost: 0 bytes in 0 blocks ==41643== still reachable: 24 bytes in 2 blocks ==41643== suppressed: 618,859 bytes in 8,247 blocks ==41643== Reachable blocks (those to which a pointer was found) are not shown. ==41643== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==41643== ==41643== For lists of detected and suppressed errors, rerun with: -s ==41643== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 103 from 38)